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BioLiP
>protein
ALGHTLPFYTGTKPTFPMDTTLAVIITIFLTALVTFIIILPGIRGKTRLFWLLRVVTSLFIGAVILAVNFSSEWSVGHVN
ANTTYKAFSPKWVSVDVGLQIGLGGVNITLTGTPVQQLNETINYNEAFAWRLGRSYAEEYAKALEKGLPDPVLYLAEKFT
PRSPCGLYNQYRLAGHYASAMLWVAFLCWLLANVMLSMPVLVYGGHMLLATGLFQLLALFFFSMTTSLISPCPLRLGTAV
LHTHHGPAFWITLATGLLCILLGLVMAVAHRMQ

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wxu:B 273 273 1.0000 1.0000 1.0000 0.0 6wxr:B, 6wxu:D, 6wxv:B
2 7d3e:B 272 272 0.8681 0.8713 0.8713 5.69e-179 7d3e:D, 7d3f:B, 7d3f:D
3 7uws:E 422 37 0.0513 0.0332 0.3784 1.9 6bjy:A, 6bjy:B, 6bjy:C, 6bjy:D, 6bjy:E, 2gic:A, 2gic:B, 2gic:C, 2gic:D, 2gic:E, 3hhz:K, 3hhz:L, 3hhz:M, 3hhz:N, 3hhz:O, 3pmk:A, 3pmk:D, 3pmk:B, 3pmk:C, 3ptx:A, 3ptx:B, 3ptx:C, 3ptx:D, 3ptx:E, 3pu0:A, 3pu0:B, 3pu0:C, 3pu0:D, 3pu0:E, 3pu1:A, 3pu1:B, 3pu1:C, 3pu1:D, 3pu1:E, 3pu4:A, 3pu4:B, 3pu4:C, 3pu4:D, 3pu4:E, 5uk4:P, 5uk4:Q, 5uk4:N, 5uk4:M, 5uk4:O, 5uk4:R, 5uk4:S, 5uk4:T, 5uk4:K, 5uk4:L, 5uk4:B, 5uk4:C, 5uk4:D, 5uk4:E, 5uk4:F, 5uk4:G, 5uk4:H, 5uk4:I, 5uk4:J, 5uk4:A, 5ukb:D, 5ukb:C, 5ukb:B, 5ukb:A, 5ukb:E, 7umk:A, 7uws:A, 7uws:B, 7uws:C, 7uws:D, 7uws:F, 2wyy:A, 2wyy:C, 2wyy:D, 2wyy:F, 2wyy:H, 2wyy:I, 2wyy:J, 2wyy:K, 2wyy:L, 2wyy:M
4 7k0y:A 3669 68 0.0916 0.0068 0.3676 3.3
5 7z87:A 3689 68 0.0916 0.0068 0.3676 3.3
6 7sud:A 3740 68 0.0916 0.0067 0.3676 3.3
7 7su3:A 3802 68 0.0916 0.0066 0.3676 3.3
8 3hwo:A 379 29 0.0440 0.0317 0.4138 5.3 3hwo:B, 5jxz:A, 5jxz:B, 5jy4:A, 5jy4:B, 5jy8:A, 5jy8:B, 5jzd:A, 5jzd:B
9 8ez9:L 3662 68 0.0879 0.0066 0.3529 7.6 8ez9:C
10 6zha:A 3707 68 0.0879 0.0065 0.3529 7.6 6zh8:A
11 8eza:L 3720 68 0.0879 0.0065 0.3529 7.6 8eza:C, 7lt3:C, 7lt3:L
12 8ezb:C 3724 68 0.0879 0.0064 0.3529 7.6 8ezb:L
13 7sgl:A 3852 68 0.0879 0.0062 0.3529 7.6
14 7nfc:A 3562 68 0.0879 0.0067 0.3529 7.8 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
15 7nfe:A 3585 68 0.0879 0.0067 0.3529 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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