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BioLiP
>protein
ALALDTPLPTPSGWTTMGDVAVGDHLLGPDGEPTRVVADTDVMLGRPCYVVEFSDGTAIVADAQHQWPTEHGVRITANLR
AGMHTVVSLAPAVQITAVRRRPSVPVRCVEVDNPEHLYLAGPGMVPTHN

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6own:B 129 129 1.0000 1.0000 1.0000 1.56e-91 6own:A, 6own:C
2 8r6s:E 1091 32 0.0930 0.0110 0.3750 0.61 8rdj:E
3 6hqv:A 1555 89 0.1938 0.0161 0.2809 1.2 6hqv:B
4 5d4c:K 231 93 0.2171 0.1212 0.3011 4.0 2a68:A, 2a68:B, 2a68:K, 2a68:L, 2a69:A, 2a69:B, 2a69:K, 2a69:L, 5d4c:B, 5d4c:L, 5d4d:L, 5e17:B, 5e18:B, 7eh0:B, 7eh1:B, 4g7h:B, 1iw7:A, 1iw7:B, 1iw7:K, 1iw7:L, 6kqd:B, 6kqd:K, 6kqe:B, 6kqf:B, 6kqg:B, 6kqh:B, 6kqm:B, 6kqn:B, 6l74:B, 6lts:B, 7mlb:B, 7mli:B, 7mlj:B, 4oin:B, 4oip:B, 7rdq:B, 1smy:A, 1smy:B, 5vo8:B, 8w8n:B, 8w8o:B, 8w8p:B, 5x21:A, 5x22:B, 5x22:L
5 8wa1:c 1176 31 0.0775 0.0085 0.3226 4.1
6 2owt:A 315 55 0.1163 0.0476 0.2727 6.3 2ows:A
7 3zyy:X 628 95 0.2016 0.0414 0.2737 6.8 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
8 3acl:A 288 38 0.0930 0.0417 0.3158 7.7 4ero:A, 4ewa:A, 4ewd:A, 4ewe:A, 4gul:A, 6h1h:A, 6h1i:A, 4hlt:A, 1j1l:A, 5jct:A, 6n0j:A, 6n0k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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