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BioLiP
>protein
ALAGTIIAGASLTFQVLDKVLEELGKVSRKIAVGIDNESGGTWTALNAYFRSGTTDVILPEFVPNTKALLYSGRKDTGPV
ATGAVAAFAYYMSSGNTLGVMFSVPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYRGDNGWHEKNLGYGLRMKGI
MTSAGEAKMQIKISR

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o72:A 175 175 1.0000 1.0000 1.0000 5.83e-129 1o72:B
2 4tsl:A 178 175 0.6286 0.6180 0.6286 5.60e-82 5gwf:B, 5gwf:D, 4tsl:B, 4tsn:A, 4tsn:B, 4tsn:C, 4tsn:D, 4tso:A, 4tso:B, 4tsp:A, 4tsp:B, 4tsq:A, 4tsq:E, 4tsq:B, 4tsq:C, 4tsq:D, 4tsq:F, 4tsy:A, 4tsy:B, 4tsy:C, 4tsy:D
3 6p2m:A 696 30 0.0571 0.0144 0.3333 2.4
4 3gn5:A 132 55 0.0800 0.1061 0.2545 3.4 3ga8:A, 3gn5:B, 3hi2:A, 3hi2:C, 3o9x:A, 3o9x:B
5 3kyq:A 193 54 0.0914 0.0829 0.2963 6.1
6 3th1:A 246 96 0.1657 0.1179 0.3021 6.7 3th1:B, 3th1:C
7 8hij:A 498 83 0.1371 0.0482 0.2892 9.1 8dep:A, 8goe:A, 8gof:A, 8hik:A, 7tx6:A, 7tx7:A, 7xq0:A, 7xq1:A, 7xq2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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