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BioLiP
>protein
AKSKNHTNHNQSRKNHRNGIKPPLPLYMYNSKRGGWLPALVNTRRVRKNNQKAALKARRERLAAHQA

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v8m:Bd 70 67 1.0000 0.9571 1.0000 8.80e-44 8ova:Bd, 8ove:Bd
2 5t5h:d 63 63 0.7910 0.8413 0.8413 5.15e-34
3 5t2a:b 69 67 0.8060 0.7826 0.8060 3.66e-33 8a3w:b, 8a98:b, 6az3:b, 3jcs:b, 8ovj:b, 8rxh:Lb, 8rxx:Lb
4 4v6w:Cb 75 69 0.4776 0.4267 0.4638 1.18e-09 6xu6:Cb, 6xu7:Cb, 6xu8:Cb
5 8oeq:BW 63 63 0.4776 0.5079 0.5079 1.46e-08 8bn3:N9, 8c3a:AC, 8c3a:BW, 8cq7:AC, 8cq7:BW, 8cqw:AC, 8cqw:BW, 8cre:AC, 8cre:BW, 5it7:bb, 5ndv:N9, 5ndw:n9, 8oeq:AC, 8p8n:RB, 8p8u:RB, 8pfr:RB, 7pzy:AC, 7q08:AC, 7q0f:AC, 7q0p:AC, 7q0r:AC, 8q5i:AC, 6qik:a, 6qt0:a, 6qtz:a, 6ri5:a, 6rzz:a, 6s05:a, 6uz7:Bb
6 9bh5:Cb 52 52 0.3881 0.5000 0.5000 4.45e-08 9cai:Cb
7 8fru:b 57 56 0.4030 0.4737 0.4821 4.60e-07 8br8:Lc, 8brm:Lc, 8bsi:Lc, 8bsj:Lc, 8btd:Lc, 8btr:Lc, 7pwg:b, 7pwo:b2
8 8azw:O 49 50 0.4030 0.5510 0.5400 1.15e-06 8b2l:O3, 7qiw:d, 7qiz:d
9 8aaf:O 58 34 0.3433 0.3966 0.6765 1.19e-06 8agt:O, 8agu:O, 8agv:O, 8agw:O, 8agx:O, 8agz:O, 5apn:b, 5apo:b, 7azy:W, 7b7d:LX, 8bip:Lb, 8bjq:Lb, 8bqd:AV, 8bqx:AV, 8ccs:N, 8cdl:N, 8cdr:N, 8ceh:N, 8cf5:N, 8cg8:N, 8cgn:N, 8civ:N, 8cku:N, 8cmj:N, 5dat:N9, 5dat:n9, 5dc3:N9, 5dc3:n9, 5dge:N9, 5dge:n9, 5dgf:N9, 5dgf:n9, 5dgv:N9, 5dgv:n9, 8eub:Ab, 8evp:Ab, 8evq:Ab, 8evr:Ab, 8evs:Ab, 8evt:Ab, 8ewb:Ab, 8ewc:Ab, 5fci:N9, 5fci:n9, 5fcj:N9, 5fcj:n9, 5gak:d, 6gq1:b, 6gqb:b, 6gqv:b, 5h4p:b, 6hd7:d, 8hfr:b3, 6hhq:AC, 6hhq:DD, 5i4l:N9, 5i4l:n9, 6i7o:AV, 6i7o:XV, 3j6x:69, 3j6y:69, 3j77:79, 3j78:79, 5juo:GA, 5jup:GA, 5jus:GA, 5jut:GA, 5juu:GA, 8k2d:Lb, 8k82:Lb, 5lyb:N9, 5lyb:n9, 5m1j:b5, 5mc6:AV, 5mei:AC, 5mei:DD, 7mpi:Ab, 7mpj:Ab, 6n8j:o, 6n8k:o, 6n8l:o, 6n8m:o, 6n8n:o, 6n8o:o, 7n8b:Ab, 5ndg:N9, 5ndg:n9, 5ndv:n9, 5ndw:N9, 7nrc:Ld, 7nrd:Ld, 5obm:N9, 5obm:n9, 6oig:b, 5on6:AC, 5on6:DD, 7osa:eL29, 7osm:eL29, 8p8m:RB, 6q8y:AV, 6r84:d, 6r86:d, 6r87:d, 7rr5:Lb, 6s47:Ad, 6snt:ao, 6sv4:AV, 6sv4:XV, 6sv4:zV, 6t4q:Lb, 5t62:o, 5t6r:o, 6t7i:Lb, 6t7t:Lb, 6t83:by, 6t83:M, 5tbw:AC, 5tbw:DD, 6tb3:AV, 5tga:N9, 5tga:n9, 5tgm:N9, 5tgm:n9, 6tnu:AV, 7too:AL29, 7top:AL29, 4u3m:N9, 4u3m:n9, 4u3n:N9, 4u3n:n9, 4u3u:N9, 4u3u:n9, 4u4n:N9, 4u4n:n9, 4u4o:N9, 4u4o:n9, 4u4q:N9, 4u4q:n9, 4u4r:N9, 4u4r:n9, 4u4u:N9, 4u4u:n9, 4u4y:N9, 4u4y:n9, 4u4z:N9, 4u4z:n9, 4u50:N9, 4u50:n9, 4u51:N9, 4u51:n9, 4u52:N9, 4u52:n9, 4u53:N9, 4u53:n9, 4u55:N9, 4u55:n9, 4u56:N9, 4u56:n9, 4u6f:N9, 4u6f:n9, 4v88:Bb, 4v88:Db, 4v8t:b, 4v8y:Bb, 4v8z:Bb, 4v91:b, 6woo:b, 6xiq:b, 6xir:b, 8y0u:Lb, 7z34:o, 6z6j:Lb, 6z6k:Lb, 7zpq:Ba, 7zrs:Ba, 7zs5:Bc, 7zuw:Ba, 7zux:Ea, 7zw0:Le
10 8g5y:Lb 111 23 0.2985 0.1802 0.8696 1.21e-06 8b5l:b, 8b6c:b, 9bdl:AL29, 9bdn:AL29, 9bdp:AL29, 8bhf:O1, 8bpo:a2, 8btk:Bb, 7cpu:Lb, 7cpv:Lb, 6d90:b, 6d9j:b, 9f1b:Bb, 9f1c:Bb, 9f1d:Bb, 7f5s:Lb, 8g5z:Lb, 8g60:Lb, 8g61:Lb, 8g6j:Lb, 8glp:Lb, 6hcf:b3, 6hcj:b3, 6hcm:b3, 6hcq:b3, 8ifd:2V, 8ife:2V, 6ip5:2V, 6ip6:2V, 6ip8:2V, 8jdj:g, 8jdk:g, 8jdl:g, 8jdm:g, 8k2c:Lb, 5lzs:b, 5lzt:b, 5lzu:b, 5lzv:b, 5lzw:b, 5lzx:b, 5lzy:b, 5lzz:b, 7mdz:b, 6mtb:b, 6mtc:b, 6mtd:b, 6mte:b, 7nwg:b3, 7nwh:b, 7o7y:Bb, 7o7z:Bb, 7o80:Bb, 7o81:Bb, 8ohd:Lb, 8oj0:Lb, 8oj5:Lb, 8oj8:Lb, 7ow7:V, 7oyd:b, 8p2k:Bb, 6p5i:Ab, 6p5j:Ab, 6p5k:Ab, 6p5n:Ab, 6qzp:Lb, 6r5q:b, 6r6g:b, 6r7q:b, 8rjb:b, 8rjc:b, 8rjd:b, 6sgc:b2, 6t59:b3, 7tm3:b, 7toq:AL29, 7tor:AL29, 7tut:b, 7ucj:b, 7uck:b, 6xa1:Lb, 7xnx:Lb, 7xny:Lb, 8xsx:Lb, 8xsy:Lb, 8xsz:Lb, 8y0w:Lb, 8y0x:Lb, 6y6x:Lb, 8yoo:Lb, 8yop:Lb, 6z6l:Lb, 6z6m:Lb, 6z6n:Lb, 7zjw:Le, 7zjx:Le, 6zm7:Lb, 6zme:Lb, 6zmi:Lb, 6zmo:Lb
11 6ole:c 100 23 0.2985 0.2000 0.8696 1.29e-06 8a3d:V, 8fl6:LM, 8fl7:LM, 8fl9:LM, 8fla:LM, 8flb:LM, 8flc:LM, 8fld:LM, 8fle:LM, 8flf:LM, 8idt:C, 8idy:C, 8ie3:C, 8ine:C, 8inf:C, 8ink:A, 8ipd:A, 8ipx:A, 8ipy:A, 6lqm:C, 6lsr:C, 6lss:C, 6lu8:C, 6olf:c, 6oli:c, 6olz:Ab, 6om0:c, 6om7:c, 8q7z:Bb, 8q87:Bb, 7qgg:c, 8qoi:Lb, 6w6l:c
12 4v7e:Cb 58 54 0.4030 0.4655 0.5000 1.92e-06
13 7ls2:V2 117 23 0.2985 0.1709 0.8696 1.93e-06 7a01:r2, 5aj0:Ab, 7bhp:Lb, 4d5y:b, 4d67:b, 6frk:b, 6ftg:b, 6fti:b, 6ftj:b, 6gz3:Ab, 6gz4:Ab, 6gz5:Ab, 3j7o:b, 3j7p:b, 3j7q:b, 3j7r:b, 3j92:b, 3jag:b, 3jah:b, 3jai:b, 3jaj:b, 3jan:b, 5lks:Lb, 7ls1:V2, 7nfx:b, 7nwi:b, 7obr:b, 6olg:Ab, 7oya:b1, 7oyb:b1, 7oyc:b1, 8qfd:b, 7qvp:Lb, 7qvp:Mb, 7qwq:b, 7qwr:b, 7qws:b, 6r6p:b, 8scb:b, 6swa:Z, 5t2c:V, 4ug0:Lb, 4ujc:Bb, 4ujd:Ab, 4uje:Cb, 4v6x:Cb, 6y0g:Lb, 6y2l:Lb, 6y57:Lb, 6zvk:r2
14 3j79:4 66 23 0.2836 0.2879 0.8261 2.38e-06 3jbn:A4, 3jbo:A4, 3jbp:A4, 8tpu:A4, 5umd:4
15 6zu5:LBB 63 21 0.2836 0.3016 0.9048 3.98e-06
16 7qep:N9 55 23 0.2687 0.3273 0.7826 5.25e-06
17 8ip8:OB 50 51 0.4030 0.5400 0.5294 9.95e-06 8ipa:OB, 8ipb:OB, 8jiv:Cb
18 7r81:d1 64 23 0.2687 0.2812 0.7826 4.36e-05 7olc:Lb, 7old:Lb, 8oo0:Lb, 8pv6:Lb, 8pv8:Lb, 7z3n:Lb, 7z3o:Lb
19 5xxb:a 49 48 0.3284 0.4490 0.4583 1.64e-04
20 8eui:b 56 19 0.2239 0.2679 0.7895 3.41e-04 8eug:b
21 4v8p:AT 65 50 0.3731 0.3846 0.5000 0.001 4v8p:DT, 4v8p:FT, 4v8p:HT
22 6zj3:Lq 91 21 0.2239 0.1648 0.7143 0.008
23 6rm3:LBB 51 21 0.1940 0.2549 0.6190 0.80
24 6z7n:M 458 48 0.2537 0.0371 0.3542 1.6
25 6kjj:A 361 22 0.1642 0.0305 0.5000 3.0 6kjp:A, 6kjq:A, 6kjr:A
26 8ppp:A 500 27 0.1493 0.0200 0.3704 4.5 8ppp:B, 8pyx:A, 8pyx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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