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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRIEANIKFEILTETREMAEEIADRVAVKYFNDYAGIIYI
CSAEVLYGHTFCGPEGCSA

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r30:B 102 100 0.9899 0.9608 0.9800 6.95e-66 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
2 7cyf:D 109 109 0.9798 0.8899 0.8899 5.87e-64 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
3 6mmo:A 91 91 0.4949 0.5385 0.5385 4.21e-30 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
4 6ntb:C 104 98 0.5051 0.4808 0.5102 4.56e-29 6mm2:A, 6ntb:A, 6ntb:B
5 5d4n:B 90 84 0.2121 0.2333 0.2500 0.015 5drk:C
6 5d4o:A 106 93 0.2323 0.2170 0.2473 0.044 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
7 4b55:A 273 39 0.1717 0.0623 0.4359 0.60 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
8 3dls:A 285 27 0.1212 0.0421 0.4444 0.89 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
9 4a7z:A 881 19 0.1212 0.0136 0.6316 1.0 4a7k:A, 4a7y:A
10 3m07:A 584 25 0.1313 0.0223 0.5200 2.4
11 2okk:A 483 51 0.1515 0.0311 0.2941 2.5
12 4rs0:A 557 50 0.1717 0.0305 0.3400 5.9 6bl3:A, 6bl3:B, 6bl3:C, 6bl3:D, 6bl4:A, 6bl4:B, 6bl4:C, 6bl4:D, 4cox:A, 4cox:B, 4cox:C, 4cox:D, 5cox:A, 5cox:B, 5cox:C, 5cox:D, 6cox:A, 6cox:B, 1cvu:B, 1cvu:A, 1cx2:A, 1cx2:B, 1cx2:C, 1cx2:D, 1ddx:A, 1ddx:B, 1ddx:C, 1ddx:D, 4e1g:A, 4e1g:B, 8et0:A, 8et0:B, 5fdq:A, 5fdq:B, 4fm5:A, 4fm5:B, 4fm5:C, 4fm5:D, 3hs5:A, 3hs5:B, 3hs6:A, 3hs6:B, 3hs7:A, 3hs7:B, 5jvy:A, 5jvy:B, 5jvz:A, 5jvz:B, 5jw1:A, 5jw1:B, 3krk:A, 3krk:B, 3ln0:A, 3ln0:B, 3ln0:C, 3ln0:D, 3ln1:A, 3ln1:B, 3ln1:C, 3ln1:D, 4m10:A, 4m10:B, 4m10:C, 4m10:D, 4m11:A, 4m11:B, 4m11:C, 4m11:D, 3mdl:A, 3mdl:B, 3mqe:A, 3mqe:B, 3mqe:C, 3mqe:D, 3nt1:A, 3nt1:B, 3ntb:A, 3ntb:B, 3ntb:C, 3ntb:D, 3ntg:A, 3ntg:B, 3ntg:C, 3ntg:D, 6ofy:A, 6ofy:B, 3olt:A, 3olt:B, 3olu:A, 3olu:B, 4otj:A, 4otj:B, 4otj:C, 4otj:D, 4oty:A, 4oty:B, 3pgh:A, 3pgh:B, 3pgh:C, 3pgh:D, 4ph9:A, 4ph9:B, 1pxx:A, 1pxx:B, 1pxx:C, 1pxx:D, 3q7d:A, 3q7d:B, 3qh0:A, 3qh0:B, 3qmo:A, 3qmo:B, 3rr3:A, 3rr3:B, 3rr3:C, 3rr3:D, 4rrw:A, 4rrw:B, 4rrw:C, 4rrw:D, 4rrx:A, 4rrx:B, 4rrz:A, 4rrz:B, 4rrz:C, 4rrz:D, 4rut:A, 4rut:B, 4rut:C, 4rut:D, 3tzi:A, 3tzi:B, 6v3r:A, 6v3r:B, 6v3r:C, 6v3r:D, 5w58:A, 4z0l:A, 4z0l:B, 4z0l:C, 4z0l:D
13 6ucz:B 265 38 0.1313 0.0491 0.3421 6.4 6ucz:A
14 3rpd:A 345 46 0.1717 0.0493 0.3696 8.1 3rpd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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