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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRDIEANIKFEILTETREMAEEIADRVAVKYFNDYAGIIY
ICSAEVLYGHTFCGPEGCSA

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r30:B 102 100 0.9900 0.9706 0.9900 1.03e-68 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
2 7cyf:D 109 109 0.9800 0.8991 0.8991 4.30e-65 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
3 6ntb:C 104 98 0.5000 0.4808 0.5102 1.76e-30 6mm2:A, 6ntb:A, 6ntb:B
4 6mmo:A 91 92 0.4900 0.5385 0.5326 8.43e-30 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
5 5d4n:B 90 85 0.2300 0.2556 0.2706 0.004 5drk:C
6 5d4o:A 106 93 0.2300 0.2170 0.2473 0.017 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
7 4wbd:A 540 58 0.1700 0.0315 0.2931 0.49
8 6m0w:A 1032 56 0.1800 0.0174 0.3214 0.79 6m0v:A, 6m0x:A
9 3dls:A 285 27 0.1200 0.0421 0.4444 0.86 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
10 4a7z:A 881 19 0.1200 0.0136 0.6316 1.0 4a7k:A, 4a7y:A
11 7vw3:A 1052 61 0.1900 0.0181 0.3115 1.9 5axw:A, 5czz:A, 7el1:A, 7eni:A, 7enr:A, 8jft:A, 8jg9:A, 8jg9:D
12 5a6k:A 626 45 0.1400 0.0224 0.3111 2.8 5a6a:A, 5a6b:A, 5a6b:B, 5a6b:C, 5a6b:D, 5a6k:B, 5ac4:A, 5ac4:B, 5ac5:A, 5ac5:B
13 4b55:A 273 39 0.1600 0.0586 0.4103 6.4 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
14 4c5y:A 436 66 0.1900 0.0436 0.2879 6.6 4c5y:B
15 6jqh:B 513 42 0.1400 0.0273 0.3333 8.4 6jqh:A
16 3rpd:A 345 46 0.1700 0.0493 0.3696 8.7 3rpd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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