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BioLiP
>protein
AKLLDRQENGFIIEKMVEEFGMSYLEATTAFLEENSIPETQFAKFIPSGIIEKIQSEAIDENLLRPSVVRC

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d7d:K 71 71 1.0000 1.0000 1.0000 2.71e-47
2 6tgh:A 410 52 0.2535 0.0439 0.3462 0.62 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
3 7s0m:B 305 47 0.1690 0.0393 0.2553 2.2 7s0m:A
4 3ut1:A 313 53 0.2535 0.0575 0.3396 2.6 4fl6:A, 4fl6:B, 4l59:A
5 7dde:A 525 64 0.2394 0.0324 0.2656 5.2 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
6 3k9b:C 453 71 0.2817 0.0442 0.2817 5.8
7 3hqf:A 173 28 0.1690 0.0694 0.4286 6.4
8 6gw4:A 307 19 0.1408 0.0326 0.5263 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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