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BioLiP
>protein
AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY
KISTTTNCNTVKF

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5lqv:A 93 93 1.0000 1.0000 1.0000 9.02e-62
2 1fk6:A 93 92 0.5806 0.5806 0.5870 1.11e-31 1fk7:A
3 1rzl:A 91 90 0.5591 0.5714 0.5778 1.40e-31 1uvc:A, 1uvc:B
4 1bwo:A 90 90 0.5376 0.5556 0.5556 3.50e-31 1bwo:B, 1cz2:A
5 3gsh:A 91 90 0.5054 0.5165 0.5222 1.99e-30 3gsh:B, 1jtb:A, 1mid:A
6 6iwo:A 92 91 0.4301 0.4348 0.4396 9.73e-22 6iwo:B, 6iwp:A, 5tvi:W, 7w9a:A
7 3ktc:A 330 55 0.1828 0.0515 0.3091 0.072 3ktc:B
8 8fkp:NQ 324 73 0.2258 0.0648 0.2877 1.7 8fkr:NQ, 8fkt:NQ, 8fkv:NQ
9 8r9b:A 301 25 0.0860 0.0266 0.3200 4.7 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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