Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AHEILIAETEAFLKNVAPETRTAIISAITGGKSACKSAAKLIKNEHLPLMSGEATTMHIVMRCLYPEIKPWKKASDMLNK
ATSSLKKSEGRDIRKQMKAAGDFLGVESMMKMRAFRDDQIMEMVEEVYDHPDDYTPDIRIGTITAWLRCKNKKS

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5m1m:A 154 154 1.0000 1.0000 1.0000 1.93e-114
2 5u8c:B 283 38 0.0714 0.0389 0.2895 0.54 2a5s:A, 2a5t:B, 5dex:B, 5h8f:A, 5h8h:A, 5h8n:A, 5h8q:A, 5i2k:A, 5i2n:A, 5i56:B, 5i57:B, 5i58:B, 5i59:B, 5jty:B, 4jwx:A, 5kcj:A, 5kdt:A, 4nf4:B, 4nf5:B, 4nf6:B, 4nf8:B, 6odl:A, 6odl:B, 6ovd:B, 6ove:B, 5tp9:A, 5tpa:A, 6usu:B, 6usv:B, 6uz6:B, 6uzg:B, 6uzr:B, 6uzw:B, 6uzx:B, 5vih:B, 5vii:B, 5vij:B
3 7eor:A 745 26 0.0584 0.0121 0.3462 1.7 7eor:C, 7yfi:B
4 7eoq:A 783 26 0.0584 0.0115 0.3462 1.8 7eoq:C, 7eou:A, 7eou:C, 7eu7:B, 7eu7:D, 5tpw:B, 5tq2:B
5 5uow:B 795 36 0.0779 0.0151 0.3333 2.4
6 6nmx:A 350 40 0.0909 0.0400 0.3500 3.1 6cgq:A, 6cgq:B, 6nmx:B, 6nmx:C, 6nmx:D
7 6cyz:A 295 32 0.0519 0.0271 0.2500 3.7 6cyz:B
8 9are:B 789 26 0.0519 0.0101 0.3077 3.8 9are:D, 9arf:B, 9arf:D, 9ari:B, 9ari:D, 9bib:B, 9bib:D, 6e7r:B, 6e7r:D, 6e7s:B, 6e7s:D, 6e7t:B, 6e7t:D, 6e7u:B, 6e7u:D, 6e7v:B, 6e7v:D, 6e7w:B, 6e7w:D, 6e7x:B, 6e7x:D, 5ewj:B, 5ewj:D, 5ewl:B, 5ewl:D, 5ewm:B, 5ewm:D, 8g18:B, 8g18:D, 3jpy:A, 3qel:B, 3qel:D, 3qem:B, 3qem:D, 7saa:B, 7saa:D, 7sac:B, 7sac:D, 6whu:B, 6whu:D, 6whv:B, 6whv:D, 6whw:B, 6whw:D, 6whx:B, 6whx:D
9 4pe5:D 727 26 0.0519 0.0110 0.3077 3.9 4pe5:B
10 4tll:D 757 26 0.0519 0.0106 0.3077 4.3 4tll:B, 4tlm:B, 5un1:B
11 4tlm:D 753 26 0.0519 0.0106 0.3077 4.3
12 5iov:B 798 26 0.0519 0.0100 0.3077 4.3 5iou:B, 5iou:D, 5iov:D, 5un1:D, 5un1:H

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218