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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGPGDVVVPCHGEHQAGIVTPPPSFIALVALDLASTSDRASVERLLRVWTVDIERLTTGRPGLADSEPELALVPAALTVT
VGFGPGLLTAAGLRHRAPAWLHPLPPFGIDRLDPAWCDGDVVLQVCADDRTTLAHAVRVLTKEAQGLASVRWVQRGFRRS
PGISEPDGTSMRNLMGQVEGTANLDPRTDPDLLWHRDGEPGWLTGGTSMVVRRIAMNLDTWDELSRGAREATIGRTLRTG
APLTGRAEHDEPDLEALDDHGRPVIDLEAHIRRARPTQREETFLRRAYNYDEAPPPGRASDSGLLFVTYQRDVDAQFTPV
QRRLDAADLLNEWTFPVGSAVFAVPGGWSAGEYVGQRLLEG

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qzo:A 361 361 1.0000 1.0000 1.0000 0.0 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
2 8fjq:B 361 359 0.5291 0.5291 0.5320 3.63e-120 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
3 4gt2:A 371 359 0.4294 0.4178 0.4318 4.55e-78 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
4 7dlk:A 363 373 0.3767 0.3747 0.3646 9.80e-76 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
5 8rgs:A 366 360 0.4127 0.4071 0.4139 5.58e-69 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
6 8ck9:A 374 361 0.4155 0.4011 0.4155 1.67e-65
7 4gs1:B 376 362 0.4127 0.3963 0.4116 2.06e-62 4gs1:A
8 2y4e:A 384 371 0.3823 0.3594 0.3720 7.95e-62 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
9 5fw4:A 368 362 0.4100 0.4022 0.4088 8.89e-59 5fw4:B
10 6jbn:A 391 373 0.3795 0.3504 0.3673 5.30e-52 6jbn:B
11 5de0:B 298 218 0.1440 0.1745 0.2385 8.11e-07 5de0:A, 5de0:C, 5de0:D
12 3qns:A 311 234 0.1662 0.1929 0.2564 7.08e-05 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
13 7ylo:A 311 319 0.1939 0.2251 0.2194 4.34e-04 7ylo:B
14 7bok:A 309 139 0.0997 0.1165 0.2590 0.001 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
15 2iiz:A 306 220 0.1413 0.1667 0.2318 0.003
16 5c2i:A 468 61 0.0554 0.0427 0.3279 0.010 5c2i:B, 5c2i:C, 5c2i:D
17 7yzt:A 306 149 0.1080 0.1275 0.2617 0.019 7yzt:B, 7yzt:C
18 8u4z:A 313 102 0.0803 0.0927 0.2843 0.044
19 4gu7:A 310 161 0.1247 0.1452 0.2795 0.14 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
20 4pab:B 824 37 0.0443 0.0194 0.4324 0.43 5l46:A, 5l46:B, 4p9s:A, 4p9s:B, 4paa:A, 4paa:B, 4pab:A
21 7anv:A 467 186 0.1302 0.1006 0.2527 0.85
22 4eq5:A 516 86 0.0665 0.0465 0.2791 5.9
23 1jr7:A 306 65 0.0526 0.0621 0.2923 7.4 8cdf:A, 6gpe:A, 6gpe:B, 6gpn:A, 6gpn:B, 6hl8:A, 6hl8:B, 6hl9:A, 6hl9:B, 2r6s:A
24 5vj0:D 300 75 0.0637 0.0767 0.3067 8.1 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
25 6s8w:B 491 34 0.0388 0.0285 0.4118 8.1 6s8w:A, 6s8w:D
26 6s8w:C 470 34 0.0388 0.0298 0.4118 8.3
27 2ddu:A 301 52 0.0471 0.0565 0.3269 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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