Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AGEMDRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSE
HWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQA
VKNHADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSR
GDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLQGQLSPKMDHLVCFMGGLLASGSTEG
LSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKDGWWRSSVGDFFVKPLDRHNLQRPETVES
IMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILFLDEFDLT
KVVFNTEAHPFPVLDEEILKSQSLTTGWSL

The query sequence (length=510) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1g6i:A 510 510 1.0000 1.0000 1.0000 0.0
2 1fo2:A 456 490 0.3745 0.4189 0.3898 5.44e-99 1fo3:A, 5kij:A, 5kk7:A, 5kk7:B, 1x9d:A
3 5kkb:A 469 498 0.3373 0.3667 0.3454 1.63e-83 5kkb:B, 1nxc:A
4 5meh:A 438 486 0.2588 0.3014 0.2716 3.17e-39 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
5 1kkt:A 475 534 0.2784 0.2989 0.2659 5.63e-28 1kre:B, 1kre:A, 1krf:A, 1krf:B, 2ri9:A, 2ri9:B
6 7pik:C 557 86 0.0510 0.0467 0.3023 1.3 7pik:A, 7pik:B
7 8jq5:B 421 49 0.0275 0.0333 0.2857 1.7 8jq3:A, 8jq3:B, 8jq3:C, 8jq3:D, 8jq4:A, 8jq4:B, 8jq4:C, 8jq4:D, 8jq5:A, 8jq5:C, 8jq5:D, 8jq6:A, 8jq6:B, 8jq6:C, 8jq6:D
8 3a9l:A 207 28 0.0255 0.0628 0.4643 5.2 3a9l:B
9 1e1c:A 727 50 0.0333 0.0234 0.3400 5.6 1e1c:C, 1req:A, 1req:C, 2req:A, 2req:C, 3req:A, 4req:A, 4req:C, 5req:A, 5req:C, 6req:A, 6req:C, 7req:A, 7req:C
10 5olc:C 351 72 0.0412 0.0598 0.2917 5.6 5olc:D, 5olc:F, 5olc:G, 5olc:H
11 8des:A 475 77 0.0412 0.0442 0.2727 7.0
12 5hww:A 128 38 0.0216 0.0859 0.2895 7.1 5hwv:A, 5hwv:B, 5hww:B
13 4yng:E 470 72 0.0412 0.0447 0.2917 7.8 8eq0:B, 8eq0:A, 4yng:A, 4yng:B, 4yng:C, 4yng:D, 4yng:F, 4yng:G, 4yng:H

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218