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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AFNSWLEGQNLKEQVKNPNIEVGDYSYYSGFYHSKTFEEQAVRYLLGDAPTQEVWESGQFGEVDKLRIGKFCSIASGATF
MMAGNQGHRADWISTFPFSKKEFGEGVKDGFQRAGDTIVGNDVWIGSEAMIMPGVHIGDGAIIGARAVITKNVAPYSVVV
GNNVVVKKRFDENLIQTLLVIKWWDWPLQHIKNTMEILCSGHIEELEQYFIKNVG

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pxa:E 221 215 1.0000 0.9729 1.0000 4.23e-162 6pxa:A, 6pxa:B, 6pxa:C, 6pxa:D, 6pxa:F, 6pxa:G, 6pxa:H, 6pxa:I, 6pxa:J, 6pxa:K, 6pxa:L, 5ux9:A, 5ux9:B, 5ux9:C, 5ux9:D
2 6pub:A 210 209 0.5302 0.5429 0.5455 3.01e-70 6u9c:A, 6u9c:B, 6u9c:C
3 8j40:A 209 213 0.5488 0.5646 0.5540 1.15e-68
4 2xat:A 208 213 0.5163 0.5337 0.5211 5.75e-64
5 4hus:A 212 208 0.4000 0.4057 0.4135 2.52e-41 4hur:A, 4hur:B, 4hur:C, 4hus:C, 6x3c:A, 6x3c:F, 6x3c:B, 6x3c:C, 6x3c:D, 6x3c:E, 6x3j:A, 6x3j:B, 6x3j:D, 6x3j:C, 6x3j:E, 6x3j:F
6 1khr:A 206 196 0.4047 0.4223 0.4439 3.40e-41 3dho:A, 3dho:C, 3dho:B, 3dho:D, 3dho:F, 3dho:E, 1khr:B, 1khr:C, 1khr:D, 1khr:E, 1khr:F, 1kk4:A, 1kk4:B, 1kk4:C, 1kk4:D, 1kk4:E, 1kk4:F, 1mr9:A, 1mr9:C, 1mr9:B, 1mr9:X, 1mr9:Z, 1mr9:Y, 1mrl:A, 1mrl:B, 1mrl:C
7 7uuk:C 276 88 0.1814 0.1413 0.4432 8.48e-18 7jm1:A, 7jm1:C, 7jm1:B, 7jm2:A, 7jm2:C, 7jm2:B, 7uuj:A, 7uuj:C, 7uuj:B, 7uuk:A, 7uuk:B, 7uul:A, 7uul:B, 7uul:D, 7uul:C, 7uul:F, 7uul:E, 7uum:A, 7uun:A, 7uuo:B
8 5u2k:A 190 66 0.1256 0.1421 0.4091 9.14e-14 5v0z:A, 5v0z:C, 5v0z:B, 3v4e:A, 3v4e:C, 3v4e:B
9 3igj:C 188 102 0.1907 0.2181 0.4020 5.36e-12 3igj:A, 3igj:B
10 4isx:A 186 101 0.1581 0.1828 0.3366 5.80e-11 4isx:B
11 1kru:A 201 96 0.1488 0.1592 0.3333 7.98e-09 1kqa:A, 1kqa:B, 1kqa:C, 1krr:A, 1krr:B, 1krr:C, 1kru:B, 1kru:C, 1krv:A, 1krv:C, 1krv:B
12 4mzu:F 294 46 0.1070 0.0782 0.5000 1.22e-06 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
13 4mzu:F 294 53 0.0837 0.0612 0.3396 0.47 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
14 2wle:C 211 103 0.1395 0.1422 0.2913 2.24e-05 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
15 2fko:A 173 152 0.2140 0.2659 0.3026 2.51e-05 1v3w:A, 1v67:A
16 7s3u:A 145 40 0.0884 0.1310 0.4750 2.55e-05 7s3w:A, 7s41:A, 7s42:A, 7s43:A, 7s44:A, 7s45:A
17 3fsb:A 260 38 0.0837 0.0692 0.4737 3.39e-05 3fs8:A, 3fs8:B, 3fsb:B, 3fsc:A, 3fsc:B
18 3fsb:A 260 43 0.0605 0.0500 0.3023 3.7 3fs8:A, 3fs8:B, 3fsb:B, 3fsc:A, 3fsc:B
19 4fce:A 441 124 0.1674 0.0816 0.2903 2.03e-04
20 1hm8:A 458 45 0.0744 0.0349 0.3556 2.56e-04 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
21 7txp:A 209 97 0.1302 0.1340 0.2887 2.60e-04 7txq:A, 7txs:A
22 4e1k:A 450 44 0.0791 0.0378 0.3864 8.99e-04 4knr:A, 4knx:A, 4kpx:A, 4kpz:A, 4kql:A, 2v0i:A, 2v0j:A, 2v0k:A, 2v0l:A, 2vd4:A, 2w0v:A, 2w0w:A
23 2oi6:B 452 44 0.0744 0.0354 0.3636 0.001 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B
24 8vr7:E 180 50 0.0744 0.0889 0.3200 0.002 8vr6:A, 8vr7:A, 8vr7:B, 8vr7:C, 8vr7:D, 8vr7:F
25 4n69:A 243 44 0.0837 0.0741 0.4091 0.003 4n69:B, 4n6b:A, 4n6b:E, 4n6b:B, 4n6b:C, 4n6b:D, 4n6b:F
26 3nz2:J 185 45 0.0744 0.0865 0.3556 0.004 3ect:A, 3nz2:A, 3nz2:C, 3nz2:B, 3nz2:D, 3nz2:E, 3nz2:F, 3nz2:G, 3nz2:H, 3nz2:I, 3nz2:K, 3nz2:L
27 6wye:A 261 43 0.0837 0.0690 0.4186 0.014 7ra4:A, 7ra4:C, 7ra4:B, 6wye:C, 6wye:B, 6wye:D, 6wye:F, 6wye:E
28 3d8v:A 478 44 0.0884 0.0397 0.4318 0.016 3dj4:A, 4g3p:A, 4g3q:A, 4g3s:A, 4g87:A, 6ge9:A, 4hcq:A, 4k6r:A, 2qkx:A, 3spt:A, 3st8:A
29 3d8v:A 478 75 0.1023 0.0460 0.2933 7.7 3dj4:A, 4g3p:A, 4g3q:A, 4g3s:A, 4g87:A, 6ge9:A, 4hcq:A, 4k6r:A, 2qkx:A, 3spt:A, 3st8:A
30 3mqg:C 192 46 0.0837 0.0938 0.3913 0.018 3mqg:A, 3mqg:B, 3mqg:D, 3mqg:E, 3mqg:F, 3mqh:A, 3mqh:C, 3mqh:B, 3mqh:D, 3mqh:F, 3mqh:E
31 3foq:A 439 44 0.0884 0.0433 0.4318 0.027
32 7vfq:C 397 66 0.0791 0.0428 0.2576 0.035 7vfq:A, 7vfq:B, 7vfq:D, 7vfr:A
33 3bss:A 194 55 0.0744 0.0825 0.2909 0.036 3bsy:A, 3bsy:C, 3bsy:B, 5t2y:A, 5t2y:B, 5tyh:A, 2vhe:A, 2vhe:B
34 4ihh:E 340 34 0.0791 0.0500 0.5000 0.064 4ihf:D, 4ihf:E, 4ihf:F, 4ihf:A, 4ihf:B, 4ihf:C, 4ihg:E, 4ihg:C, 4ihg:B, 4ihg:D, 4ihh:A, 4ihh:C, 4ihh:B, 4ihh:D, 4ihh:F, 6p83:A, 6p83:C, 6p83:B, 6p84:A, 6p84:C, 6p84:B, 6p85:A, 6p85:C, 6p85:B, 6p86:A, 6p86:C, 6p86:B, 6p87:A, 6p87:C, 6p87:B, 6p88:A, 6p88:C, 6p88:B, 6p89:A, 6p89:C, 6p89:B, 6p8a:A, 6p8a:C, 6p8a:B, 6p8b:A, 6p8b:C, 6p8b:B
35 4ihh:E 340 112 0.1395 0.0882 0.2679 0.98 4ihf:D, 4ihf:E, 4ihf:F, 4ihf:A, 4ihf:B, 4ihf:C, 4ihg:E, 4ihg:C, 4ihg:B, 4ihg:D, 4ihh:A, 4ihh:C, 4ihh:B, 4ihh:D, 4ihh:F, 6p83:A, 6p83:C, 6p83:B, 6p84:A, 6p84:C, 6p84:B, 6p85:A, 6p85:C, 6p85:B, 6p86:A, 6p86:C, 6p86:B, 6p87:A, 6p87:C, 6p87:B, 6p88:A, 6p88:C, 6p88:B, 6p89:A, 6p89:C, 6p89:B, 6p8a:A, 6p8a:C, 6p8a:B, 6p8b:A, 6p8b:C, 6p8b:B
36 3vbm:E 193 49 0.0698 0.0777 0.3061 0.11 3vbi:A, 3vbi:E, 3vbi:C, 3vbj:A, 3vbj:C, 3vbj:E, 3vbk:A, 3vbk:E, 3vbk:C, 3vbl:A, 3vbl:C, 3vbl:E, 3vbm:A, 3vbm:C, 3vbn:A, 3vbn:E, 3vbn:C, 3vbp:A, 3vbp:E, 3vbp:C
37 7l7y:AAA 217 53 0.0977 0.0968 0.3962 0.14 7l7z:AAA, 7l81:AAA, 7l82:AAA
38 4h7o:A 258 39 0.0698 0.0581 0.3846 0.16 4h7o:C, 4h7o:B
39 2z8d:A 401 66 0.0744 0.0399 0.2424 0.32 2z8d:B, 2z8e:A, 2z8e:B, 2z8f:A, 2z8f:B
40 8e62:C 183 73 0.1070 0.1257 0.3151 0.36 8e62:A, 8e62:B, 8e62:D, 8e62:E, 8e62:F
41 1t3d:A 262 39 0.0698 0.0573 0.3846 0.44 7e3y:A, 7e3y:C, 7e3y:B, 8i04:A, 8i04:C, 8i04:B, 8i06:A, 8i06:B, 8i09:A, 8i09:B, 8i09:C, 8i09:D, 8i09:E, 8i09:F, 8i09:G, 8i09:H, 8i09:I, 8i09:J, 8i09:K, 8i09:L, 6jvu:A, 6jvu:C, 6jvu:B, 6jvu:D, 6jvu:F, 6jvu:E, 1t3d:B, 1t3d:C
42 6jly:E 414 61 0.0884 0.0459 0.3115 0.48 6jly:F, 6jlz:E, 6jlz:F
43 4eaa:A 210 46 0.0837 0.0857 0.3913 0.50 4ea7:A, 4ea8:A, 4ea9:A, 4eab:A
44 3vnp:A 171 67 0.0884 0.1111 0.2836 0.58 3vnp:B, 3vnp:C
45 6jlz:I 430 40 0.0698 0.0349 0.3750 0.61
46 8gpm:A 193 56 0.0791 0.0881 0.3036 0.67 8gpp:A, 8gpp:B, 8gpp:C
47 7z8m:V 182 89 0.1023 0.1209 0.2472 0.92
48 2iu8:A 346 40 0.0744 0.0462 0.4000 1.3 2iu8:B, 2iu8:C, 2iu9:A, 2iu9:B, 2iu9:C, 2iua:A, 2iua:C
49 3i3a:A 259 49 0.0698 0.0579 0.3061 1.6 3i3a:B, 3i3a:C, 3i3x:A, 3i3x:B, 3i3x:C
50 2ggq:A 401 67 0.0977 0.0524 0.3134 2.5 5z09:A, 5z09:B, 5z09:C, 5z09:D
51 2ggq:A 401 57 0.0837 0.0449 0.3158 9.7 5z09:A, 5z09:B, 5z09:C, 5z09:D
52 3gvd:I 272 39 0.0651 0.0515 0.3590 3.1 3gvd:A, 3gvd:C, 3gvd:B, 3gvd:D, 3gvd:F, 3gvd:E, 3gvd:G, 3gvd:H, 3gvd:J, 3gvd:K, 3gvd:L
53 3kwc:A 205 115 0.1674 0.1756 0.3130 3.4 3kwc:B, 3kwc:C, 3kwc:D, 3kwc:E, 3kwc:F, 3kwd:A, 3kwe:A
54 4j1x:C 195 54 0.0791 0.0872 0.3148 3.6 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B
55 3r8y:A 203 57 0.1116 0.1182 0.4211 4.4 3r8y:C, 3r8y:D, 3r8y:F
56 7zw9:A 173 58 0.0930 0.1156 0.3448 4.6
57 3tio:F 177 94 0.1163 0.1412 0.2660 5.0 3tio:A, 3tio:B, 3tio:C, 3tio:D, 3tio:E, 3tis:A, 3tis:B, 3tis:C
58 1ssq:D 257 58 0.0837 0.0700 0.3103 8.4 1ssq:A, 1sst:A, 1sst:B, 1sst:C
59 3ffr:A 361 40 0.0698 0.0416 0.3750 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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