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BioLiP
>protein
AFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRAAIWRGFYIAGDPALAYGYAQD
QEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERT
VVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGKPPR

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6edg:A 213 208 0.9610 0.9249 0.9471 4.54e-138 1aer:A, 1aer:B, 3b78:B, 3b78:D, 3b78:F, 3b82:B, 3b82:D, 3b82:F, 3b8h:B, 3b8h:D, 3b8h:F, 1dma:A, 1dma:B, 1xk9:A, 1xk9:B, 2zit:B, 2zit:D, 2zit:F, 1zm4:B, 1zm4:D, 1zm4:F, 1zm9:B, 1zm9:D, 1zm9:F
2 3q9o:A 605 199 0.3951 0.1339 0.4070 1.66e-35 3ess:A, 3ki0:A, 3ki1:A, 3ki2:A, 3ki3:A, 3ki4:A, 3ki5:A, 3ki6:A, 3ki7:A, 3ny6:A, 2q6m:A
3 9biw:B 528 135 0.1756 0.0682 0.2667 0.22 9biw:A
4 6vvo:A 448 79 0.0976 0.0446 0.2532 1.8
5 7dsu:B 420 64 0.0976 0.0476 0.3125 4.6 7dsu:A
6 1ddt:A 523 135 0.1756 0.0688 0.2667 5.6 4ae1:A, 4ae1:B, 1dtp:A, 1f0l:A, 1f0l:B, 8g0g:A, 8g0g:B, 1mdt:A, 1mdt:B, 7o4w:A, 1tox:A, 1tox:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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