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BioLiP
>protein
AFIPYAGAQFEPEEMLSKSAEYYQFMDHRRTVREFSNRAIPLEVIENIVMTASTAPSGAHKQPWTFVVVSDPQIKAKIRQ
AAEKEEFESDWHKPFLEIAPYLIVVFRKAYDVLPDGTQRKNYYVQESVGIACGFLLAAIHQAGLVALTHTPSPMNFLQKI
LQRPENERPFLLVPVGYPAEGAMVPDLQRKDKAAVMVVYHH

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ko7:B 200 201 0.9900 0.9950 0.9900 8.46e-147
2 5ko8:B 218 218 0.9950 0.9174 0.9174 2.56e-145 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
3 4ttc:A 220 217 0.4428 0.4045 0.4101 1.26e-58 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
4 4ttb:A 189 201 0.4527 0.4815 0.4527 3.02e-57 4ttb:B
5 3gb5:A 185 202 0.4229 0.4595 0.4208 4.92e-49 3to0:A, 3to0:B
6 3tnz:A 222 218 0.4378 0.3964 0.4037 8.39e-47 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
7 6pz0:A 185 175 0.2886 0.3135 0.3314 9.09e-28 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
8 4dn2:A 191 170 0.2637 0.2775 0.3118 1.41e-13 4dn2:B
9 4eo3:A 321 180 0.2587 0.1620 0.2889 9.35e-13 4eo3:B
10 4g8s:A 182 167 0.2587 0.2857 0.3114 4.20e-12 4g8s:B
11 3kwk:A 168 156 0.2139 0.2560 0.2756 1.22e-11
12 3m5k:A 168 157 0.1940 0.2321 0.2484 1.05e-09 3m5k:B
13 8cqt:B 164 161 0.1940 0.2378 0.2422 3.85e-08 8cqt:A
14 3ek3:A 187 180 0.2239 0.2406 0.2500 4.06e-08
15 3gag:A 206 183 0.1990 0.1942 0.2186 2.19e-07 3gag:B, 3gag:C, 3gag:D
16 3gfa:A 197 54 0.0896 0.0914 0.3333 3.58e-07 3gfa:B
17 4qlx:A 217 60 0.1244 0.1152 0.4167 5.84e-07 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
18 3e10:B 167 159 0.2139 0.2575 0.2704 6.60e-07 3e10:A
19 1nox:A 200 85 0.1343 0.1350 0.3176 9.93e-07
20 3gbh:B 213 67 0.0995 0.0939 0.2985 1.46e-06 3gbh:A, 3gbh:C, 3gbh:D
21 4xoq:A 204 173 0.2338 0.2304 0.2717 3.60e-06 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
22 5j6c:A 173 165 0.1791 0.2081 0.2182 5.28e-06 5j6c:B
23 3ge5:A 176 154 0.1692 0.1932 0.2208 7.67e-06 3ge5:B
24 5j62:B 209 55 0.0945 0.0909 0.3455 7.90e-06 5j62:A
25 3eo8:A 219 108 0.1542 0.1416 0.2870 2.20e-05 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
26 3gr3:A 226 87 0.1045 0.0929 0.2414 4.39e-05 3gr3:B
27 3qdl:A 178 123 0.1791 0.2022 0.2927 4.68e-05 3qdl:B, 3qdl:C, 3qdl:D
28 3n2s:A 248 167 0.1642 0.1331 0.1976 1.77e-04 3n2s:B, 3n2s:C, 3n2s:D
29 2isj:A 219 74 0.1194 0.1096 0.3243 2.66e-04 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
30 7dp0:A 223 51 0.0896 0.0807 0.3529 3.88e-04 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
31 8uc3:A 180 180 0.2438 0.2722 0.2722 5.02e-04 8uc3:B
32 3ge6:A 210 61 0.0896 0.0857 0.2951 5.83e-04 3ge6:B
33 8qyg:B 225 53 0.0896 0.0800 0.3396 0.001 8q5g:A, 8q5g:B, 8qyg:A
34 3koq:A 173 61 0.0746 0.0867 0.2459 0.002 3h4o:A, 3koq:B, 3koq:C, 3koq:D
35 3e39:A 175 52 0.0846 0.0971 0.3269 0.004 3e39:B
36 2b67:A 201 194 0.2040 0.2040 0.2113 0.005 2b67:B, 2b67:C, 2b67:D
37 3eof:A 248 172 0.2239 0.1815 0.2616 0.006 3eof:B
38 6wt2:A 221 53 0.0846 0.0769 0.3208 0.006 6wt2:B, 6wt2:C, 6wt2:D
39 2wzv:B 223 55 0.0995 0.0897 0.3636 0.011 2wzv:A, 2wzw:A, 2wzw:B
40 7tmf:B 183 99 0.1244 0.1366 0.2525 0.011 7tmf:A, 7tmg:A, 7tmg:B
41 2i7h:A 187 40 0.0597 0.0642 0.3000 0.011 2i7h:B, 2i7h:C, 2i7h:D
42 5chc:A 895 130 0.1791 0.0402 0.2769 0.019 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
43 3bem:B 210 64 0.0995 0.0952 0.3125 0.050 3bem:A
44 8cqs:B 194 194 0.2040 0.2113 0.2113 0.087 8cqs:A
45 2fre:A 200 43 0.0846 0.0850 0.3953 0.11 2fre:B
46 5j8d:A 216 55 0.0796 0.0741 0.2909 0.12 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
47 1ds7:A 217 55 0.0796 0.0737 0.2909 0.28 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
48 6czp:A 219 56 0.0796 0.0731 0.2857 0.30 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
49 3pxv:B 189 54 0.0796 0.0847 0.2963 0.30 3pxv:A, 3pxv:C, 3pxv:D
50 4nh0:A 861 38 0.0746 0.0174 0.3947 0.30 4n1a:A, 4n1a:B, 4n1a:C, 4n1a:E, 4nh0:B
51 7jh4:A 223 52 0.0647 0.0583 0.2500 0.31 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
52 8dor:A 217 28 0.0597 0.0553 0.4286 0.34 8dor:B, 8dor:C, 8dor:D
53 7s14:B 223 54 0.0647 0.0583 0.2407 0.38 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
54 2r01:A 195 174 0.1791 0.1846 0.2069 1.2
55 2hay:D 222 83 0.1095 0.0991 0.2651 1.2 2hay:A, 2hay:B, 2hay:C
56 5uu6:C 236 58 0.0697 0.0593 0.2414 2.2 5uu6:A, 5uu6:B, 5uu6:D
57 3bm1:A 177 97 0.1144 0.1299 0.2371 2.7 3bm1:B
58 6tgh:A 410 58 0.0995 0.0488 0.3448 3.6 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
59 8dil:A 175 97 0.1144 0.1314 0.2371 4.9 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
60 8yk3:A 620 29 0.0547 0.0177 0.3793 6.9 8yk3:B
61 4hlu:A 265 21 0.0498 0.0377 0.4762 7.4 4hlu:B, 4zir:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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