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BioLiP
>protein
AEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKN

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cxx:A 59 59 1.0000 1.0000 1.0000 8.65e-38 1ibi:A, 1qli:A
2 1b8t:A 192 59 0.7966 0.2448 0.7966 1.46e-28 1ctl:A
3 1b8t:A 192 56 0.4576 0.1406 0.4821 1.23e-10 1ctl:A
4 2o13:A 58 57 0.7458 0.7586 0.7719 9.10e-28
5 2o10:A 60 57 0.4746 0.4667 0.4912 1.54e-14
6 1a7i:A 60 57 0.4746 0.4667 0.4912 1.94e-14
7 1iml:A 76 50 0.4237 0.3289 0.5000 1.34e-11
8 2cu8:A 76 58 0.4576 0.3553 0.4655 5.30e-11
9 2d8y:A 91 52 0.3220 0.2088 0.3654 1.17e-07
10 2lzu:A 72 52 0.3051 0.2500 0.3462 2.94e-06
11 2cur:A 69 35 0.2542 0.2174 0.4286 4.50e-06
12 2dar:A 90 55 0.3051 0.2000 0.3273 1.14e-05
13 2d8z:A 70 35 0.2373 0.2000 0.4000 3.37e-05
14 2cor:A 79 57 0.3390 0.2532 0.3509 3.89e-05
15 2ehe:A 82 57 0.2712 0.1951 0.2807 4.48e-05
16 8y6k:A 741 51 0.2712 0.0216 0.3137 4.78e-05 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
17 2cup:A 101 35 0.2542 0.1485 0.4286 5.45e-05
18 3ixe:B 70 51 0.2712 0.2286 0.3137 5.62e-05
19 1wyh:A 72 44 0.2542 0.2083 0.3409 9.32e-05
20 2egq:A 77 59 0.3051 0.2338 0.3051 1.25e-04
21 2miu:A 98 58 0.3051 0.1837 0.3103 1.28e-04
22 3f6q:B 72 51 0.2881 0.2361 0.3333 1.36e-04 4hi8:B, 4hi9:B
23 1g47:A 70 51 0.2881 0.2429 0.3333 1.46e-04 2kbx:B
24 2co8:A 82 54 0.2712 0.1951 0.2963 1.68e-04
25 1x63:A 82 57 0.2712 0.1951 0.2807 2.81e-04
26 2cuq:A 80 58 0.2542 0.1875 0.2586 3.60e-04
27 1x4k:A 72 57 0.2542 0.2083 0.2632 5.40e-04
28 2mbv:A 96 52 0.3220 0.1979 0.3654 0.001
29 4jcj:C 150 57 0.3051 0.1200 0.3158 0.001 4jcj:A, 4jcj:B
30 4jcj:C 150 54 0.2542 0.1000 0.2778 0.89 4jcj:A, 4jcj:B
31 2d8x:A 70 56 0.2881 0.2429 0.3036 0.002
32 7qb0:A 127 57 0.3051 0.1417 0.3158 0.002
33 7qb0:A 127 57 0.3051 0.1417 0.3158 0.005
34 1x61:A 72 51 0.2542 0.2083 0.2941 0.002
35 2dj7:A 80 53 0.2542 0.1875 0.2830 0.002
36 6u4m:A 65 55 0.2881 0.2615 0.3091 0.003 6u4n:B
37 2dfy:X 158 52 0.3220 0.1203 0.3654 0.003 2dfy:C, 1rut:X
38 2dfy:X 158 59 0.2542 0.0949 0.2542 0.046 2dfy:C, 1rut:X
39 2xqn:T 125 57 0.2542 0.1200 0.2632 0.005 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
40 2xqn:T 125 55 0.2542 0.1200 0.2727 1.6 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
41 1x4l:A 72 34 0.2034 0.1667 0.3529 0.007
42 1zfo:A 30 26 0.2373 0.4667 0.5385 0.010
43 7lt9:B 131 55 0.3220 0.1450 0.3455 0.020 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
44 7lt9:B 131 51 0.2712 0.1221 0.3137 0.51 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
45 1x3h:A 80 30 0.1695 0.1250 0.3333 0.025
46 6cme:A 154 57 0.2373 0.0909 0.2456 0.027 6cme:B, 3mmk:A, 3mmk:B
47 6cme:A 154 57 0.2712 0.1039 0.2807 3.1 6cme:B, 3mmk:A, 3mmk:B
48 2l4z:A 121 59 0.2542 0.1240 0.2542 0.035
49 1x64:A 89 50 0.3051 0.2022 0.3600 0.042
50 1m3v:A 122 59 0.2542 0.1230 0.2542 0.043
51 6mif:A 79 51 0.2712 0.2025 0.3137 0.20
52 1v6g:A 81 32 0.2203 0.1605 0.4062 0.28
53 2rgt:B 154 56 0.2203 0.0844 0.2321 0.29 2rgt:A
54 2jtn:A 182 55 0.2203 0.0714 0.2364 0.69
55 1q3b:A 259 34 0.2034 0.0463 0.3529 1.1 2ea0:A, 6fbu:A, 1k3w:A, 1k3x:A, 2opf:A, 2oq4:A, 2oq4:B, 1q39:A, 1q3c:A
56 2lxd:A 123 36 0.2034 0.0976 0.3333 1.3 2l6y:B, 2l6z:C
57 4xgl:A 342 35 0.2034 0.0351 0.3429 1.5 4rou:B, 4rou:A, 4xgm:A
58 8cbk:E 470 35 0.2034 0.0255 0.3429 1.5 7onu:E
59 6yxy:BX 133 32 0.1695 0.0752 0.3125 1.6 7aoi:BX, 6hiv:BX, 6hix:BX
60 6e2p:A 457 46 0.2542 0.0328 0.3261 1.8 6e2p:B
61 9bct:P 48 19 0.1695 0.2083 0.5263 2.2 9bcu:P, 4qiw:P, 4qiw:W
62 4kfz:B 148 36 0.2034 0.0811 0.3333 2.4 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
63 2cs3:A 93 50 0.2542 0.1613 0.3000 2.8
64 7bam:A 1904 40 0.2712 0.0084 0.4000 3.0 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B
65 7aor:z 1071 37 0.2034 0.0112 0.3243 3.3
66 1x62:A 79 50 0.2373 0.1772 0.2800 3.7
67 4mdh:A 333 38 0.2203 0.0390 0.3421 5.4 4mdh:B, 5mdh:A, 5mdh:B, 7rm9:A
68 3qo8:A 441 34 0.2034 0.0272 0.3529 5.9 3qo7:A
69 1ss9:A 280 16 0.1186 0.0250 0.4375 6.0 1g9r:A, 1ga8:A
70 4gnx:C 433 38 0.1864 0.0254 0.2895 6.2 4gnx:Z, 4gop:C, 4gop:Z
71 8b25:B 359 25 0.1695 0.0279 0.4000 8.9 8b1v:A, 8b1v:B, 8b25:A, 8b26:A, 8b26:B
72 2fiy:A 285 32 0.1864 0.0386 0.3438 9.2 2fiy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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