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BioLiP
>protein
AEINPLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1mt1:E 50 50 1.0000 1.0000 1.0000 2.24e-30 1n13:E, 2qqc:E, 2qqd:D
2 2qqd:C 159 46 0.9000 0.2830 0.9783 3.47e-26 1mt1:A, 1mt1:F, 1mt1:B, 1mt1:C, 1mt1:G, 1mt1:J, 1mt1:H, 1mt1:K, 1n13:B, 1n13:C, 1n13:D, 1n13:A, 1n13:F, 1n13:H, 1n13:K, 1n13:G, 1n13:J, 1n13:I, 1n13:L, 2qqc:B, 2qqc:C, 2qqc:A, 2qqc:F, 2qqc:D, 2qqc:G, 2qqc:J, 2qqc:I, 2qqc:L, 2qqc:H, 2qqc:K, 2qqd:A, 2qqd:E, 2qqd:B
3 8w8e:Z 360 24 0.2200 0.0306 0.4583 0.94 8w8f:Z
4 5oik:Z 488 24 0.2200 0.0225 0.4583 0.95 6gml:Z, 8p4f:Z, 8rbx:Z, 7ycx:j
5 1fsu:A 475 22 0.2000 0.0211 0.4545 1.4
6 3pgb:A 740 38 0.3000 0.0203 0.3947 2.0
7 4g89:A 233 35 0.3000 0.0644 0.4286 3.5 4g89:B
8 7dbe:B 332 24 0.2000 0.0301 0.4167 8.3 7dbe:A, 7dbe:C, 7dbe:D, 7wud:B, 7wud:A, 7wud:C, 7wud:D
9 1qz9:A 404 28 0.2200 0.0272 0.3929 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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