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BioLiP
>protein
ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA
LEKARS

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5eyo:C 88 86 1.0000 0.9773 1.0000 5.48e-58 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
2 1hlo:A 80 71 0.8256 0.8875 1.0000 1.78e-47
3 5i50:B 96 70 0.3721 0.3333 0.4571 1.01e-13 5i50:A, 1nkp:A, 1nkp:D
4 8ia3:E 111 86 0.3488 0.2703 0.3488 3.15e-09 8ia3:A, 8ia3:B, 8ia3:F
5 1an4:A 65 60 0.2907 0.3846 0.4167 1.97e-08 1an4:B
6 1am9:C 82 63 0.2326 0.2439 0.3175 1.18e-05 1am9:D, 1am9:A, 1am9:B
7 8osb:B 66 51 0.1977 0.2576 0.3333 1.81e-05
8 8ow1:B 116 78 0.3023 0.2241 0.3333 1.08e-04 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
9 8hov:A 87 74 0.2558 0.2529 0.2973 3.15e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
10 7f2f:B 94 79 0.2326 0.2128 0.2532 0.001 7f2f:A
11 5gnj:B 77 51 0.1977 0.2208 0.3333 0.006 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
12 1nlw:A 79 78 0.2791 0.3038 0.3077 0.017 1nlw:D
13 1mdy:A 68 53 0.1744 0.2206 0.2830 0.021 1mdy:B, 1mdy:C, 1mdy:D
14 7xi3:A 287 55 0.2093 0.0627 0.3273 0.064
15 4a15:A 596 79 0.2093 0.0302 0.2278 0.15 5h8w:A, 2vsf:A
16 7d8t:A 199 55 0.1860 0.0804 0.2909 0.21 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
17 7xq5:A 75 62 0.2093 0.2400 0.2903 0.36
18 7xi4:A 283 53 0.1860 0.0565 0.3019 0.52 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
19 4zpr:A 235 48 0.1628 0.0596 0.2917 0.77
20 8i0p:K 312 95 0.3023 0.0833 0.2737 0.87
21 6vrb:A 1031 27 0.1512 0.0126 0.4815 1.0
22 6vrc:A 1007 27 0.1512 0.0129 0.4815 1.1
23 7z5i:A 56 52 0.1395 0.2143 0.2308 1.2 7z5i:B, 7z5k:A, 7z5k:B
24 1a0a:A 63 62 0.1744 0.2381 0.2419 2.6 1a0a:B
25 5nj8:D 134 53 0.1744 0.1119 0.2830 2.8
26 7aor:al 292 23 0.1279 0.0377 0.4783 2.8 6hiv:DL, 6hiw:DL
27 8osk:M 316 67 0.1977 0.0538 0.2537 3.2 4h10:B, 8osl:M, 8osl:O
28 7mfm:G 1483 80 0.2326 0.0135 0.2500 3.3 7mfm:H, 7mft:G
29 3ku0:A 251 37 0.1860 0.0637 0.4324 4.6 3ku0:B
30 3afv:A 439 37 0.1279 0.0251 0.2973 5.5 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
31 5x7g:A 700 33 0.1163 0.0143 0.3030 8.9 5x7h:A
32 7egv:A 590 31 0.1395 0.0203 0.3871 9.0 7egv:B, 7ehe:A, 7ehe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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