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BioLiP
>protein
ACWKANSCPGSAFESKDRLRSFALLYCRYNYKPPYGQGAFGYASAVSTHGWETEAQCINTFEQIITSCHGQSNGGTLELN
SGRLSLAFGNCEEL

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ndu:A 94 94 1.0000 1.0000 1.0000 3.40e-67 4ndu:B, 4ndv:A
2 7s9y:A 901 53 0.1702 0.0178 0.3019 0.51 7s9z:A
3 8brh:A 632 48 0.1596 0.0237 0.3125 0.75
4 6kgx:4H 206 34 0.1383 0.0631 0.3824 1.0 6kgx:bH, 7y4l:b3, 7y4l:43, 7y5e:b3, 7y5e:43, 7y7a:bB, 7y7a:4B, 7y7a:bd, 7y7a:4d
5 2zsc:A 123 20 0.1277 0.0976 0.6000 2.7 2zsc:B
6 5msu:B 459 20 0.1170 0.0240 0.5500 5.2 5mso:A, 5msu:C, 5msu:A
7 4fo4:A 348 76 0.2128 0.0575 0.2632 5.3 4fo4:B, 4ix2:A, 4ix2:B, 4ix2:C, 4ix2:D, 4qne:A, 4qne:B, 4x3z:A, 4x3z:B
8 4n0y:H 222 33 0.1489 0.0631 0.4242 7.0
9 8fdc:A 218 41 0.1596 0.0688 0.3659 7.9
10 1ko6:A 152 35 0.1170 0.0724 0.3143 9.8 1ko6:C, 2q5y:A, 2q5y:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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