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BioLiP
>protein
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1n89:A 67 67 1.0000 1.0000 1.0000 1.61e-44 1tuk:A
2 1tg7:A 971 45 0.2388 0.0165 0.3556 2.0 1xc6:A
3 3gsh:A 91 25 0.1493 0.1099 0.4000 2.6 3gsh:B, 1jtb:A, 1mid:A
4 8h2j:A 92 31 0.1791 0.1304 0.3871 4.5 8h2j:B, 8h2j:C, 8h2j:D, 8h2j:E, 8h2j:F, 8h39:A, 8h39:B, 8h39:C, 8h39:D, 8h39:E, 8h39:F, 8ixz:A, 8ixz:B, 8ixz:C, 8ixz:D, 8ixz:E, 8ixz:F, 8iy0:A, 8iy0:B, 8iy0:C, 8iy0:D, 8iy0:E, 8iy0:F, 8iy1:A, 8iy1:B, 8iy1:C, 8iy1:D, 8iy1:E, 8iy1:F, 8iy2:A, 8iy2:B, 8iy2:C, 8iy2:D, 8iy2:E, 8iy2:F, 8j8o:A, 8j8o:B, 8j8o:C, 8j8o:D, 8j8o:E, 8j8o:F
5 3esf:A 197 27 0.1343 0.0457 0.3333 6.0 3esf:B, 3esf:C, 3esf:D
6 6nbr:A 316 16 0.1343 0.0285 0.5625 7.1 6nbr:B, 6nbr:C, 6nbr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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