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BioLiP
>protein
ACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPMAR
RHQRVPMMP

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vsp:C 92 89 1.0000 0.9674 1.0000 5.09e-59 7vsp:A, 7vsp:B
2 7wsj:A 93 88 0.8090 0.7742 0.8182 4.24e-49 7vsq:A, 7vsq:B, 7vsq:C, 7wsj:B, 7wsj:C
3 7wsj:A 93 43 0.2472 0.2366 0.5116 1.27e-07 7vsq:A, 7vsq:B, 7vsq:C, 7wsj:B, 7wsj:C
4 6iv9:A 874 28 0.1124 0.0114 0.3571 2.9 6iv8:A, 6iv8:C
5 6bml:B 294 36 0.1461 0.0442 0.3611 3.1 6bml:A, 6bmm:A, 6bmm:B, 6bmn:A, 6bmn:B, 7khm:A, 7khm:B
6 6hif:G 531 40 0.1461 0.0245 0.3250 3.6 6hif:I, 6hif:H, 6hif:A, 6hif:C, 6hif:B, 6hif:D, 6hif:F, 6hif:E, 6hif:J, 6hif:L, 6hif:K, 6hif:M, 6hif:O, 6hif:N, 6hif:P, 6hif:R, 6hif:Q, 6hif:S, 6hif:U, 6hif:T, 6hif:V, 6hif:X, 6hif:W
7 6lod:B 929 33 0.1461 0.0140 0.3939 5.2 6loe:B
8 3h0l:B 410 53 0.1910 0.0415 0.3208 7.6 3h0l:E, 3h0l:H, 3h0l:K, 3h0l:N, 3h0l:Q, 3h0l:T, 3h0l:W, 3h0m:B, 3h0m:E, 3h0m:H, 3h0m:K, 3h0m:N, 3h0m:Q, 3h0m:T, 3h0m:W, 3h0r:B, 3h0r:E, 3h0r:H, 3h0r:K, 3h0r:N, 3h0r:Q, 3h0r:T, 3h0r:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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