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BioLiP
>protein
AAVIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xcm:E 74 74 1.0000 1.0000 1.0000 1.38e-52 2xcm:F
2 2yrt:A 75 63 0.4189 0.4133 0.4921 1.24e-19
3 2bum:B 238 38 0.1216 0.0378 0.2368 1.7 2buq:B, 2bur:B, 2but:B, 2buu:B, 2buv:B, 2buw:B, 2bux:B, 2buy:B, 2buz:B, 2bv0:B, 1eo2:B, 1eo9:B, 1eoa:B, 1eob:B, 1eoc:B
4 8hmc:B 1195 32 0.1622 0.0100 0.3750 4.3 8hmd:B
5 6pe2:A 456 34 0.1486 0.0241 0.3235 8.7 6p5a:A, 6p5a:G, 6pe2:G
6 4kxf:P 866 22 0.1081 0.0092 0.3636 9.2
7 4kxf:K 904 22 0.1081 0.0088 0.3636 9.3 4kxf:B, 4kxf:D, 4kxf:F, 4kxf:H, 4kxf:L, 4kxf:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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