Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAKNFLFLRLWDRNMDI
AMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKL
LLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNK
NLTLDQMIRILLCLKNNGNWQEALQFVPKRKHTGFL

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cbk:F 343 294 1.0000 0.8047 0.9388 0.0 8cbl:F, 8cbm:F, 8cbo:E, 5nfj:A, 5nfj:B, 5nfj:C, 7onu:F
2 4jwf:A 187 177 0.1848 0.2727 0.2881 1.15e-16 4jwf:B, 4jwh:A, 4jwh:B
3 4jwj:A 193 188 0.1703 0.2435 0.2500 1.59e-13 4jwj:B
4 4fmw:A 178 181 0.1667 0.2584 0.2541 7.31e-13 4fmw:B
5 2nvo:A 496 81 0.0906 0.0504 0.3086 0.32
6 6esq:A 392 97 0.0942 0.0663 0.2680 0.46 6esq:B, 6esq:C, 6esq:D
7 8oyf:A 310 34 0.0471 0.0419 0.3824 1.4 8oyg:A, 3zux:A, 3zuy:A
8 4gcz:B 378 45 0.0543 0.0397 0.3333 1.8 4gcz:A
9 2ynm:D 488 54 0.0833 0.0471 0.4259 4.0
10 8p0u:A 621 95 0.0870 0.0386 0.2526 4.9 8p0b:A, 8p0g:A, 8z85:A, 8z8j:A, 8z8n:A, 8z8x:A, 8z90:A, 8z97:A, 8z98:A, 8z9h:A, 8z9h:H, 8z9q:A, 8z9r:A, 8z9r:H
11 5uid:A 367 48 0.0543 0.0409 0.3125 6.6 5uid:D
12 4hxg:F 614 62 0.0652 0.0293 0.2903 7.4 4hxe:B, 4hxf:B, 4hxg:A, 4hxg:B, 4hxg:C, 4hxg:D, 4hxg:E, 4hxg:G, 4hxg:H, 4hxg:I, 4hxg:L
13 7zr1:D 780 123 0.0906 0.0321 0.2033 9.8 7zr1:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218