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BioLiP
>protein
AATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKHKADDDDFMHSETREKELESIDVLLEQ
TTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILK
ELSNLETLY

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5sva:D 178 169 0.9290 0.8820 0.9290 3.19e-108 7ui9:D, 7uif:D, 7uio:AD, 7uio:BD
2 2e87:A 356 59 0.1065 0.0506 0.3051 2.1
3 2blf:B 81 38 0.0710 0.1481 0.3158 3.7 2bpb:B, 2c9x:B, 2ca3:B, 2ca4:B
4 5o1l:A 375 85 0.1183 0.0533 0.2353 4.2 5o1l:B, 5o1m:A, 5o1m:B
5 7e2s:A 233 99 0.1657 0.1202 0.2828 4.3 7e2t:A, 7e2u:A, 4xkb:A, 4xkc:A
6 5yjg:A 594 39 0.1006 0.0286 0.4359 4.9 5yjh:A
7 7yg7:A 414 34 0.0710 0.0290 0.3529 7.9 7yg7:B, 7yg7:C, 7yg7:D, 7yg7:E, 7yg7:F, 7yg7:G, 7yg7:H, 7yg7:I, 7yg7:J, 7yg7:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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