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BioLiP
>protein
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHFDPVPTPRAAARAAVDELQGAPLLPF

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5z0d:B 80 78 0.9863 0.9000 0.9231 2.95e-46 2ahk:B, 2ahl:B, 3aws:B, 3awt:B, 3awu:B, 3awv:B, 3aww:B, 3awz:B, 3ax0:B, 7cit:B, 7ciy:B, 5z0e:B, 5z0f:B, 5z0h:B, 5z0i:B, 5z0j:B, 5z0k:B, 5z0l:B, 2zmx:B, 2zmy:B, 2zmz:B, 2zwe:B, 2zwf:B, 2zwg:B
2 7w7t:A 1021 18 0.1507 0.0108 0.6111 0.086 7bt2:A, 7e7s:A, 6hxb:A, 6jju:A, 6lle:A, 6lly:A, 6ln5:A, 6ln6:A, 6ln7:A, 6ln8:A, 6ln9:A, 5mpm:A, 2voy:B, 2voy:H, 2voy:E, 2voy:K, 7w7u:A, 7w7v:A, 7w7w:A
3 5ztf:A 972 18 0.1507 0.0113 0.6111 0.086
4 7eld:A 1137 27 0.1918 0.0123 0.5185 0.42 7ele:A
5 5zmw:A 1000 18 0.1370 0.0100 0.5556 0.45 5a3q:A, 5a3r:A, 5a3s:A, 5a3s:B, 2agv:A, 2agv:B, 3ar2:A, 3ar3:A, 3ar4:A, 3ar5:A, 3ar6:A, 3ar7:A, 3ar8:A, 3ar9:A, 3b9b:A, 3b9r:A, 3b9r:B, 3ba6:A, 4bew:A, 4bew:B, 2by4:A, 2c88:A, 2c8k:A, 2c8l:A, 2c9m:A, 2c9m:B, 2dqs:A, 2ear:A, 2eat:A, 2eau:A, 3fgo:A, 3fgo:B, 3fpb:A, 3fps:A, 4h1w:A, 6hef:A, 1iwo:A, 1iwo:B, 4j2t:A, 3j7t:A, 4kyt:A, 3n5k:A, 3n5k:B, 3n8g:A, 3nal:A, 3nam:A, 3nan:A, 4nab:A, 5ncq:A, 2o9j:A, 2oa0:A, 8owa:A, 8owl:A, 6rb2:A, 1su4:A, 1t5s:A, 1t5t:A, 3tlm:A, 4uu0:A, 4uu1:A, 1vfp:A, 1vfp:B, 3w5a:A, 3w5a:B, 3w5b:A, 1wpg:A, 1wpg:B, 1wpg:C, 1wpg:D, 5xa7:A, 5xa8:A, 5xa9:A, 5xaa:A, 4xou:A, 1xp5:A, 6yaa:A, 4ycl:A, 4ycm:A, 4ycn:A, 2yfy:A, 6yso:A, 6yso:B, 2zbd:A, 2zbe:A, 2zbe:B, 2zbf:A, 2zbg:A
6 1cch:A 82 57 0.2192 0.1951 0.2807 3.9 1fi3:A, 2i8f:A
7 4cab:A 507 53 0.2192 0.0316 0.3019 4.8 4cab:B, 4cab:C, 4cab:D
8 5hvm:B 452 31 0.1781 0.0288 0.4194 6.2 5hvm:A
9 1xso:A 150 43 0.1507 0.0733 0.2558 6.7 1xso:B
10 7cge:A 257 21 0.1096 0.0311 0.3810 7.1 7cge:D
11 2c39:D 248 31 0.1781 0.0524 0.4194 8.3 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
12 4ato:A 168 23 0.1233 0.0536 0.3913 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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