Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AANEADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK
DLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAK
YDQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKISK
IVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHNSI
EMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNYVTV
GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNY
EKEPTPPTR

The query sequence (length=489) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3iox:A 489 489 1.0000 1.0000 1.0000 0.0 3ipk:A, 3ipk:B, 6ubv:A, 6ubv:B, 6ubv:C, 6ubv:D
2 6e36:A 395 400 0.6155 0.7620 0.7525 0.0 6e36:B
3 6q2k:A 318 388 0.2372 0.3648 0.2990 5.48e-29 6q2l:A, 2wd6:A, 2wd6:B
4 5uqz:A 354 413 0.2311 0.3192 0.2736 1.88e-24 6cam:A
5 6ged:A 295 327 0.1738 0.2881 0.2599 3.93e-06
6 8e05:A 1749 80 0.0450 0.0126 0.2750 1.0 8e05:B, 8e06:A
7 7ojr:A 445 55 0.0368 0.0404 0.3273 3.1 7oml:A
8 1hm8:A 458 80 0.0552 0.0590 0.3375 4.1 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
9 5fq6:C 480 60 0.0450 0.0458 0.3667 4.9 5fq4:A, 5fq4:B, 5fq6:H, 5fq6:L, 5fq6:A, 5fq7:C, 5fq8:A, 5fq8:C
10 7qd4:A 908 85 0.0409 0.0220 0.2353 6.5 7qd4:D, 7qd5:A, 7qd5:D, 7qd6:A, 7qd6:D
11 6sxo:A 375 109 0.0573 0.0747 0.2569 8.1 8k2c:CA, 6swa:t, 8xsx:CA, 8xsy:CA, 8xsz:CA, 6z6l:CA, 6z6m:CA, 6z6n:CA, 6zm7:CA, 6zme:CA, 6zmi:CA, 6zmo:CA
12 6sa4:A 109 26 0.0245 0.1101 0.4615 9.3

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218