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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AAALARLGLRPVKQVRVQFCPFEKNVESTRTFLQTVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFGDGHRLIMRGAHL
TALEMLTAFASHIRAR

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8oir:Bb 101 96 1.0000 0.9505 1.0000 8.39e-68 6gaw:Bp, 6gb2:Bp, 7nqh:Bp, 7nql:Bp, 7nsh:Bp, 7nsi:Bp, 7nsj:Bp, 7o9m:k, 7of6:k, 8oit:Bb, 8pk0:k, 7qi5:k, 8xt0:L3, 8xt1:L3, 6ydp:Bp, 6ydw:Bp, 6zm5:k
2 6xyw:AJ 81 57 0.1771 0.2099 0.2982 0.001
3 4g2c:B 463 70 0.2083 0.0432 0.2857 0.27 4g2c:A
4 3ah5:A 215 40 0.1667 0.0744 0.4000 2.0 3ah5:C, 3ah5:B, 3ah5:D, 3ah5:E, 3ah5:F, 3n3y:A, 3n3y:B, 3n3y:C, 3n3y:D
5 7tbm:X1 620 24 0.0833 0.0129 0.3333 2.1
6 3zzm:A 520 28 0.1354 0.0250 0.4643 2.2 4a1o:A, 4a1o:B
7 8afz:B 376 38 0.1562 0.0399 0.3947 4.4 8a1g:D, 5tgh:A, 5tgh:E, 5tgh:C, 5tgh:G, 5tgi:A, 5tgi:B, 5tgj:A, 5tgj:C, 5tp1:A, 5tp1:B, 5tp1:C, 5tp1:D, 5wy2:A, 5wy2:C
8 6hn0:A 583 53 0.1458 0.0240 0.2642 5.8 6hn1:A, 4jk4:A, 4jk4:B, 8kfo:B, 4luf:A, 4luh:A, 4or0:A, 4or0:B, 5orf:A, 5orf:B, 5orf:C, 5orf:D, 5osw:A, 5otb:A, 5otb:B, 5otb:C, 5otb:D, 6qs9:A, 6qs9:B, 6rjv:A, 6rjv:B, 3v03:A, 3v03:B, 8wdd:A, 8wdd:B
9 8twg:B 385 34 0.1354 0.0338 0.3824 6.0
10 8oun:A 181 38 0.1354 0.0718 0.3421 7.4 8oum:A, 8oum:B, 8oum:C, 8oum:D, 8oum:E, 8oun:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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