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BioLiP
>dna
tctttcatatgaaaga

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 2fvr:B 16 16 1.0000 1.0000 1.0000 32
2 2d45:E 16 16 0.6250 0.6250 0.6250 2 2d45:F, 1xsd:B
3 7ol9:C 16 16 0.6250 0.6250 0.6250 2 7ol9:D
4 1qpi:M 15 15 0.7500 0.8000 0.8000 0
5 1qpi:N 15 15 0.7500 0.8000 0.8000 0
6 3iag:B 15 15 0.7500 0.8000 0.8000 0
7 7vn5:G 15 15 0.7500 0.8000 0.8000 0 7vn5:H, 7vn5:E, 7vn5:F
8 1n4l:B 16 16 0.5625 0.5625 0.5625 -3
9 1n4l:D 16 16 0.5625 0.5625 0.5625 -3
10 7lcc:B 17 16 0.7500 0.7059 0.7500 -3
11 1jkq:A 14 14 0.6875 0.7857 0.7857 -6
12 1d2i:C 16 16 0.5000 0.5000 0.5000 -8 1d2i:D, 1dfm:C, 1dfm:D
13 1nk2:A 16 16 0.5000 0.5000 0.5000 -8 1nk3:A
14 1nk2:B 16 16 0.5000 0.5000 0.5000 -8 1nk3:B
15 2c6y:C 16 16 0.5000 0.5000 0.5000 -8
16 2z33:B 16 16 0.5000 0.5000 0.5000 -8
17 2z33:C 16 16 0.5000 0.5000 0.5000 -8
18 5yi2:C 16 16 0.5000 0.5000 0.5000 -8 5yi2:G, 5yi2:K, 5yi2:O, 5yi2:D, 5yi2:P, 5yi2:L, 5yi2:H, 5yi3:C, 5yi3:G, 5yi3:K, 5yi3:O, 5yi3:P, 5yi3:L, 5yi3:H, 5yi3:D
19 6g1l:B 16 16 0.5000 0.5000 0.5000 -8
20 6nce:C 16 16 0.5000 0.5000 0.5000 -8
21 6py8:A 16 16 0.5000 0.5000 0.5000 -8 6py8:X
22 7upz:D 16 16 0.5000 0.5000 0.5000 -8
23 3fdq:D 15 15 0.6250 0.6667 0.6667 -10
24 7r8g:T 15 15 0.6250 0.6667 0.6667 -10
25 7rte:B 15 15 0.6250 0.6667 0.6667 -10 7rti:B, 6wqu:B
26 7vn2:G 15 15 0.6250 0.6667 0.6667 -10 7vn2:E
27 7vn4:G 15 15 0.6250 0.6667 0.6667 -10 7vn4:H, 7vn4:E, 7vn4:F
28 7vn8:G 15 15 0.6250 0.6667 0.6667 -10 7vn8:H, 7vn8:E, 7vn8:F
29 7xq5:C 15 15 0.6250 0.6667 0.6667 -10
30 1hcr:B 14 14 0.6250 0.7143 0.7143 -11 1ijw:A
31 1jj6:A 14 14 0.5625 0.6429 0.6429 -11
32 1jj8:A 14 14 0.5625 0.6429 0.6429 -11
33 1jko:A 14 14 0.6250 0.7143 0.7143 -11
34 1ais:C 17 16 0.5625 0.5294 0.5625 -13
35 1ais:E 17 16 0.6250 0.5882 0.6250 -13
36 1drg:B 16 16 0.4375 0.4375 0.4375 -13 1f44:M
37 1ig7:C 16 16 0.4375 0.4375 0.4375 -13
38 4ati:C 16 16 0.4375 0.4375 0.4375 -13
39 4ati:D 16 16 0.4375 0.4375 0.4375 -13
40 4xqq:E 16 16 0.4375 0.4375 0.4375 -13
41 4xrm:L 17 16 0.6250 0.5882 0.6250 -13
42 5z7d:I 16 16 0.4375 0.4375 0.4375 -13 5z7d:K
43 5z7d:J 16 16 0.4375 0.4375 0.4375 -13 5z7d:L
44 6pr5:B 16 16 0.4375 0.4375 0.4375 -13
45 6ryi:F 16 16 0.4375 0.4375 0.4375 -13
46 6ryi:G 16 16 0.4375 0.4375 0.4375 -13
47 7d3t:E 16 16 0.4375 0.4375 0.4375 -13 7d3t:G
48 7d8t:D 16 16 0.4375 0.4375 0.4375 -13
49 7vov:C 16 16 0.4375 0.4375 0.4375 -13 7vox:E, 7vox:G
50 7vox:D 16 16 0.4375 0.4375 0.4375 -13 7vox:F
51 8uzb:D 16 16 0.4375 0.4375 0.4375 -13
52 8xmb:N 17 16 0.6250 0.5882 0.6250 -13 8xmd:N
53 2lev:B 15 15 0.5625 0.6000 0.6000 -15
54 2lev:C 15 15 0.5625 0.6000 0.6000 -15
55 3brd:B 15 15 0.5625 0.6000 0.6000 -15 3brf:B, 3brg:B, 6dks:B, 6dks:F, 5e24:H, 5eg6:A, 2fo1:B, 4j2x:F, 4j2x:H, 1ttu:B
56 3fhz:G 20 16 0.7500 0.6000 0.7500 -15 3fhz:I, 3fhz:K
57 3fhz:H 20 16 0.7500 0.6000 0.7500 -15 3fhz:J, 3fhz:L
58 4yo2:C 15 15 0.5625 0.6000 0.6000 -15
59 4yo2:D 15 15 0.5625 0.6000 0.6000 -15
60 7n8s:C 15 15 0.5625 0.6000 0.6000 -15
61 8tw9:T 15 15 0.5625 0.6000 0.6000 -15 8twa:T
62 1jkp:A 14 14 0.5625 0.6429 0.6429 -16
63 1jkr:A 14 14 0.5625 0.6429 0.6429 -16
64 3bep:D 14 14 0.5625 0.6429 0.6429 -16
65 1c7y:D 13 13 0.5625 0.6923 0.6923 -17
66 2d45:G 13 13 0.5625 0.6923 0.6923 -17
67 5jjv:C 13 13 0.5625 0.6923 0.6923 -17 5jjv:E
68 6byy:F 13 13 0.5625 0.6923 0.6923 -17 6bz1:H, 6bz1:F, 3kov:D, 3kov:L, 7x1n:L, 7xuz:F, 7xuz:J
69 6bz1:E 13 13 0.5625 0.6923 0.6923 -17
70 1dp7:D 16 16 0.3125 0.3125 0.3125 -18
71 1g4d:B 16 16 0.3750 0.3750 0.3750 -18
72 1g4d:C 16 16 0.3750 0.3750 0.3750 -18
73 1nh2:E 16 16 0.3125 0.3125 0.3125 -18
74 1nh2:F 16 16 0.3750 0.3750 0.3750 -18 1ytf:F
75 1p8k:C 16 16 0.3750 0.3750 0.3750 -18
76 1ytf:E 16 16 0.3750 0.3750 0.3750 -18
77 2c62:C 16 16 0.3750 0.3750 0.3750 -18
78 2fvq:B 16 16 0.3750 0.3750 0.3750 -18
79 2gzk:B 16 16 0.3750 0.3750 0.3750 -18
80 2gzk:C 16 16 0.3750 0.3750 0.3750 -18
81 2ivk:I 16 16 0.3750 0.3750 0.3750 -18 2ivk:J
82 2ko0:B 16 16 0.3750 0.3750 0.3750 -18 2l1g:B
83 2ko0:C 16 16 0.3750 0.3750 0.3750 -18 2l1g:C
84 2ntz:W 16 16 0.3750 0.3750 0.3750 -18 2ntz:U
85 2ntz:Y 16 16 0.3750 0.3750 0.3750 -18 2ntz:E
86 2ql2:E 16 16 0.3750 0.3750 0.3750 -18 2ql2:G
87 2ql2:F 16 16 0.3750 0.3750 0.3750 -18 2ql2:H
88 2rdj:D 16 16 0.3750 0.3750 0.3750 -18
89 3bs1:B 16 16 0.3750 0.3750 0.3750 -18
90 3gpy:B 16 16 0.3750 0.3750 0.3750 -18
91 3khh:E 16 16 0.3750 0.3750 0.3750 -18
92 3rnu:K 16 16 0.3750 0.3750 0.3750 -18
93 3rnu:L 16 16 0.3750 0.3750 0.3750 -18
94 3veb:M 16 16 0.3750 0.3750 0.3750 -18
95 3veb:N 16 16 0.3750 0.3750 0.3750 -18
96 4a3j:T 16 16 0.3125 0.3125 0.3125 -18
97 4atk:C 16 16 0.3750 0.3750 0.3750 -18 4atk:D, 5eyo:B, 5eyo:D
98 4xr2:C 16 16 0.3750 0.3750 0.3750 -18
99 4xr3:C 16 16 0.3750 0.3750 0.3750 -18
100 4xyq:B 16 16 0.3750 0.3750 0.3750 -18
101 5d4d:G 16 16 0.3750 0.3750 0.3750 -18 5d4d:R, 5d4e:G, 5d4e:R
102 5k7z:E 16 16 0.3750 0.3750 0.3750 -18 5k7z:F
103 5mhk:F 16 16 0.3750 0.3750 0.3750 -18
104 5zdz:J 16 16 0.3750 0.3750 0.3750 -18 5ze0:J, 5ze1:J
105 6ako:A 16 16 0.3750 0.3750 0.3750 -18 7cby:B, 3co7:B, 3co7:E, 5x07:E, 5x07:B, 5x07:H, 5x07:K
106 6ako:B 16 16 0.3750 0.3750 0.3750 -18 7cby:A, 3co7:A, 3co7:D, 5x07:D, 5x07:A, 5x07:G, 5x07:J
107 6akp:B 16 16 0.3750 0.3750 0.3750 -18
108 6erf:P 16 16 0.3750 0.3750 0.3750 -18
109 6fk4:B 16 16 0.3750 0.3750 0.3750 -18
110 6fqp:L 16 16 0.3750 0.3750 0.3750 -18 6fqp:M, 6fqq:L, 6fqq:M, 6fqq:G, 6fqq:H
111 6mg1:C 16 16 0.3750 0.3750 0.3750 -18 6mg1:D, 6mg2:C, 6mg2:D, 6mg3:C, 6mg3:D
112 6n7t:T 16 16 0.3750 0.3750 0.3750 -18 6n7v:T, 8qqu:E, 6sko:I, 8u5y:D, 8u61:E, 1uaa:C, 6vaa:Z
113 6ncm:D 16 16 0.3750 0.3750 0.3750 -18
114 7yq8:F 16 16 0.3750 0.3750 0.3750 -18
115 7yzc:B 16 16 0.3750 0.3750 0.3750 -18 7yzf:A
116 7yzc:C 16 16 0.3750 0.3750 0.3750 -18 7yzf:B
117 7yzd:B 16 16 0.3750 0.3750 0.3750 -18 7yze:B
118 7yzd:C 16 16 0.3750 0.3750 0.3750 -18 7yze:C
119 8ac1:T 16 16 0.3750 0.3750 0.3750 -18 8acp:T
120 8df9:U 17 16 0.5625 0.5294 0.5625 -18
121 8ek8:C 16 16 0.3750 0.3750 0.3750 -18
122 8ekv:D 16 16 0.3750 0.3750 0.3750 -18
123 8ekz:D 16 16 0.3750 0.3750 0.3750 -18
124 8em9:C 16 16 0.3750 0.3750 0.3750 -18
125 8r0s:D 16 16 0.3750 0.3750 0.3750 -18
126 8tzz:C 16 16 0.3750 0.3750 0.3750 -18
127 9bvd:G 16 16 0.3750 0.3750 0.3750 -18
128 9cex:A 16 16 0.3750 0.3750 0.3750 -18 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
129 1by4:E 15 15 0.5000 0.5333 0.5333 -20
130 1by4:F 15 15 0.5000 0.5333 0.5333 -20 1by4:H
131 1cqt:N 15 15 0.5000 0.5333 0.5333 -20 1oct:B
132 2bgw:C 15 15 0.5000 0.5333 0.5333 -20
133 2bgw:D 15 15 0.5000 0.5333 0.5333 -20
134 3fdq:C 15 15 0.5000 0.5333 0.5333 -20
135 3p57:G 15 15 0.5000 0.5333 0.5333 -20 3p57:K
136 3sqi:C 15 15 0.5000 0.5333 0.5333 -20 3t79:C
137 4tug:H 15 15 0.5000 0.5333 0.5333 -20
138 4v8s:AD 15 15 0.5000 0.5333 0.5333 -20
139 4xr0:B 15 15 0.5000 0.5333 0.5333 -20 4xr3:B
140 5d4c:G 15 15 0.5000 0.5333 0.5333 -20 5d4c:R
141 5ean:B 15 15 0.5000 0.5333 0.5333 -20
142 7ftn:C 15 15 0.5000 0.5333 0.5333 -20
143 7jn3:J 16 15 0.6875 0.6875 0.7333 -20 7jn3:L, 7ku7:J, 7ku7:L, 7kui:J, 7kui:L
144 7o0g:F 15 15 0.5000 0.5333 0.5333 -20
145 7vn3:G 15 15 0.5000 0.5333 0.5333 -20 7vn3:H, 7vn3:E, 7vn3:F, 5zd4:G, 5zd4:H, 5zd4:E, 5zd4:F
146 7vn6:G 15 15 0.5000 0.5333 0.5333 -20 7vn6:H, 7vn6:E, 7vn6:F
147 7vn7:G 15 15 0.5000 0.5333 0.5333 -20 7vn7:H, 7vn7:E, 7vn7:F
148 7vov:D 15 15 0.5000 0.5333 0.5333 -20
149 8fik:D 15 15 0.5000 0.5333 0.5333 -20 8fik:H
150 1cqt:O 14 14 0.5000 0.5714 0.5714 -21
151 1cqt:P 14 14 0.5000 0.5714 0.5714 -21
152 1mhd:D 14 14 0.5000 0.5714 0.5714 -21
153 1qn4:C 14 14 0.5000 0.5714 0.5714 -21 1qn4:E
154 1qn4:D 14 14 0.5000 0.5714 0.5714 -21 1qn4:F
155 1qn6:C 14 14 0.5000 0.5714 0.5714 -21 1qn6:E
156 1qn6:D 14 14 0.5000 0.5714 0.5714 -21 1qn6:F
157 1qna:C 14 14 0.5000 0.5714 0.5714 -21 1qna:E
158 1qna:D 14 14 0.5000 0.5714 0.5714 -21 1qna:F
159 2vbl:C 14 14 0.5000 0.5714 0.5714 -21 2vbn:E
160 3gnb:D 14 14 0.5000 0.5714 0.5714 -21
161 3gnb:E 14 14 0.5000 0.5714 0.5714 -21
162 4par:G 14 14 0.5000 0.5714 0.5714 -21 4par:H
163 4tug:G 14 14 0.5000 0.5714 0.5714 -21
164 5j5q:E 14 14 0.5000 0.5714 0.5714 -21
165 6byy:K 14 14 0.5000 0.5714 0.5714 -21 6byy:E, 6bz1:G, 8c84:K, 3p57:E, 8pde:F, 8pde:K, 8q9n:K, 8q9p:K, 8q9q:K, 8q9r:K, 8q9r:G, 7x1n:E
166 6byy:L 14 14 0.5000 0.5714 0.5714 -21 8c84:L, 3p57:H, 8pde:G, 8pde:L, 8q9n:L, 8q9p:L, 8q9q:L, 8q9r:L, 8q9r:H, 7x1n:F
167 6erf:N 14 14 0.5000 0.5714 0.5714 -21
168 6h8q:C 19 16 0.6250 0.5263 0.6250 -21
169 7c7l:E 14 14 0.5000 0.5714 0.5714 -21
170 7lsy:M 14 14 0.5000 0.5714 0.5714 -21
171 8e24:B 14 14 0.5000 0.5714 0.5714 -21
172 8hcm:B 14 14 0.5000 0.5714 0.5714 -21
173 8hcm:C 14 14 0.5000 0.5714 0.5714 -21
174 8qa9:E 14 14 0.5000 0.5714 0.5714 -21 8qa9:F
175 1bf5:B 18 16 0.5625 0.5000 0.5625 -22
176 1zgw:B 18 16 0.5625 0.5000 0.5625 -22
177 1zgw:C 18 16 0.5625 0.5000 0.5625 -22
178 3glf:K 14 14 0.6250 0.7143 0.7143 -22 3glf:M, 3glg:K, 3glg:M, 3gli:K, 3gli:M
179 3h8o:C 13 13 0.5000 0.6154 0.6154 -22 3h8r:C
180 4bdp:T 13 13 0.5000 0.6154 0.6154 -22
181 6ki6:D 13 13 0.5000 0.6154 0.6154 -22 6ki6:E
182 7m5w:B 18 16 0.5625 0.5000 0.5625 -22
183 7m5w:C 18 16 0.5625 0.5000 0.5625 -22
184 7riq:N 18 16 0.5625 0.5000 0.5625 -22
185 8aa5:N 13 13 0.5000 0.6154 0.6154 -22
186 8k8c:C 13 13 0.5000 0.6154 0.6154 -22
187 8xay:S 13 13 0.5000 0.6154 0.6154 -22
188 8xay:T 13 13 0.5000 0.6154 0.6154 -22
189 1bpz:T 16 16 0.3125 0.3125 0.3125 -23 1zjm:T, 1zjn:T
190 1g2d:B 16 16 0.3125 0.3125 0.3125 -23 1g2d:E, 1g2f:B, 1g2f:E
191 1gu5:C 16 16 0.3125 0.3125 0.3125 -23
192 1lei:C 17 16 0.5000 0.4706 0.5000 -23
193 1lei:D 17 16 0.3125 0.2941 0.3125 -23
194 1lq1:F 16 16 0.3125 0.3125 0.3125 -23 1lq1:H
195 1ouq:C 16 16 0.2500 0.2500 0.2500 -23 1ouq:G, 1q3v:C, 1q3v:G
196 1rm1:D 18 16 0.6875 0.6111 0.6875 -23
197 1rm1:E 18 16 0.6875 0.6111 0.6875 -23
198 2d45:H 12 12 0.5000 0.6667 0.6667 -23
199 2hdc:B 17 16 0.5000 0.4706 0.5000 -23
200 2hdc:C 17 16 0.5000 0.4706 0.5000 -23
201 2qnf:D 16 16 0.3125 0.3125 0.3125 -23
202 2qnf:F 16 16 0.3125 0.3125 0.3125 -23
203 2wt7:C 16 16 0.3125 0.3125 0.3125 -23
204 2wt7:D 16 16 0.3125 0.3125 0.3125 -23
205 3co6:A 16 16 0.3125 0.3125 0.3125 -23
206 3co6:B 16 16 0.3125 0.3125 0.3125 -23
207 3coa:A 16 16 0.3125 0.3125 0.3125 -23 3coa:D
208 3coa:B 16 16 0.3125 0.3125 0.3125 -23 3coa:E
209 3dlh:X 17 16 0.5000 0.4706 0.5000 -23
210 3f73:C 16 16 0.3125 0.3125 0.3125 -23
211 3fyl:D 16 16 0.3125 0.3125 0.3125 -23 3g9m:D, 3g9o:C, 3g9p:C
212 3oqm:B 16 16 0.3125 0.3125 0.3125 -23
213 3oqm:E 16 16 0.3125 0.3125 0.3125 -23
214 3sq2:T 16 16 0.3125 0.3125 0.3125 -23 3sun:T, 3suq:T
215 4a0a:D 16 16 0.3125 0.3125 0.3125 -23
216 4bbs:T 17 16 0.5000 0.4706 0.5000 -23
217 4cn3:E 17 16 0.5000 0.4706 0.5000 -23 4cn3:G
218 4cn3:F 17 16 0.5000 0.4706 0.5000 -23 4cn3:H
219 4d1q:D 16 16 0.3125 0.3125 0.3125 -23 4d1q:F, 4d1q:J, 4d1q:L
220 4g7h:G 16 16 0.3125 0.3125 0.3125 -23 4g7h:Q, 4g7o:G, 4g7o:Q, 6l74:G, 4oin:G, 4oio:G, 4oip:G, 4oiq:G, 4oir:G
221 4g7z:G 16 16 0.3125 0.3125 0.3125 -23 4g7z:Q
222 4hqe:C 17 16 0.5000 0.4706 0.5000 -23
223 4hqe:D 17 16 0.5000 0.4706 0.5000 -23
224 4k96:F 17 16 0.5000 0.4706 0.5000 -23 4k96:H, 4o6a:F
225 4q0z:C 17 16 0.5000 0.4706 0.5000 -23 4q0z:G, 4q10:C
226 4q0z:D 17 16 0.5000 0.4706 0.5000 -23 4q0z:H, 4q10:D
227 4q5s:H 16 16 0.3125 0.3125 0.3125 -23
228 4xrs:L 16 16 0.3125 0.3125 0.3125 -23
229 5c4a:S 16 16 0.3125 0.3125 0.3125 -23
230 5e6d:C 16 16 0.3125 0.3125 0.3125 -23
231 5e6d:D 16 16 0.3125 0.3125 0.3125 -23
232 5krb:A 16 16 0.3125 0.3125 0.3125 -23
233 5krb:E 16 16 0.3125 0.3125 0.3125 -23
234 5uan:E 17 16 0.5000 0.4706 0.5000 -23
235 5uan:F 17 16 0.5000 0.4706 0.5000 -23
236 5zdz:I 16 16 0.3125 0.3125 0.3125 -23 5ze0:I, 5ze1:I
237 6a57:C 16 16 0.3125 0.3125 0.3125 -23
238 6b1s:E 16 16 0.3125 0.3125 0.3125 -23 6b1s:F
239 6cg0:I 16 16 0.3125 0.3125 0.3125 -23 6cij:I, 6dbi:I, 6dbi:J, 6dbj:I, 6dbj:J, 3jbw:I, 3jbw:J, 3jby:I, 3jby:J
240 6ct9:C 16 16 0.3125 0.3125 0.3125 -23 6cta:C, 7ftn:B
241 6cuu:G 17 16 0.5000 0.4706 0.5000 -23
242 6khy:H 16 16 0.3125 0.3125 0.3125 -23
243 6khy:I 16 16 0.3125 0.3125 0.3125 -23
244 6kqd:G 16 16 0.3125 0.3125 0.3125 -23 6kqd:Q
245 6l6y:A 16 16 0.3125 0.3125 0.3125 -23 6l6y:C
246 6nce:D 16 16 0.3125 0.3125 0.3125 -23
247 6nku:T 16 16 0.3125 0.3125 0.3125 -23 6nkv:T, 6nkw:T, 6nkx:T, 6nky:T, 6nkz:T, 6nl0:T
248 6o0x:D 16 16 0.3125 0.3125 0.3125 -23 6o0y:D
249 6o8g:E 16 16 0.3125 0.3125 0.3125 -23 6o8g:I
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1000 1egw:F 17 16 0.3750 0.3529 0.3750 -33 1egw:G, 3mu6:F, 3mu6:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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