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BioLiP
>dna
gctcccagctccctgctggctccgagtgggttccgccgctctcaa

The query sequence (length=45) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ycx:d 45 45 1.0000 1.0000 1.0000 2.09e-19
2 8w8e:T 45 45 0.9778 0.9778 0.9778 9.71e-18 8w8f:T
3 6gmh:T 48 45 0.9778 0.9167 0.9778 9.71e-18 6ted:T
4 8a3y:T 138 42 0.9111 0.2971 0.9762 4.52e-16
5 8a40:T 41 41 0.8889 0.9756 0.9756 1.63e-15
6 8oeu:T 38 38 0.8222 0.9737 0.9737 7.56e-14 8oev:T, 8oew:T
7 8of0:T 37 37 0.8000 0.9730 0.9730 2.72e-13
8 7b0y:T 37 37 0.8000 0.9730 0.9730 2.72e-13
9 8p4b:T 35 35 0.7556 0.9714 0.9714 3.52e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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