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BioLiP
>dna
cttcttcatcaactgagccgagcagacgtgcctacggaccatg

The query sequence (length=43) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wb0:X 43 43 1.0000 1.0000 1.0000 2.52e-18
2 8waz:X 43 42 0.9535 0.9535 0.9762 4.22e-16
3 8wb0:Y 54 42 0.9070 0.7222 0.9286 3.28e-12
4 8waz:Y 54 28 0.6512 0.5185 1.0000 5.49e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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