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BioLiP
>dna
cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccact

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7khc:Y 63 63 1.0000 1.0000 1.0000 3.29e-29
2 7khc:X 63 63 1.0000 1.0000 1.0000 3.29e-29
3 7khb:Y 64 47 0.7460 0.7344 1.0000 2.58e-20
4 7khb:X 60 42 0.6667 0.7000 1.0000 1.55e-17
5 7szj:X 57 39 0.6190 0.6842 1.0000 7.23e-16
6 7khi:X 36 36 0.5714 1.0000 1.0000 3.36e-14
7 7khe:X 54 36 0.5714 0.6667 1.0000 3.36e-14
8 7szj:Y 49 31 0.4921 0.6327 1.0000 2.02e-11
9 7khi:Y 28 28 0.4444 1.0000 1.0000 9.42e-10
10 7khe:Y 46 28 0.4444 0.6087 1.0000 9.42e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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