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BioLiP
>dna
aataaaaggagaaggg

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 8ek8:C 16 16 1.0000 1.0000 1.0000 32
2 8e3r:C 16 16 0.8125 0.8125 0.8125 17 8ej8:C
3 8ee9:C 16 16 0.8125 0.8125 0.8125 17
4 8ek8:A 15 15 0.9375 1.0000 1.0000 15
5 8e4h:C 16 16 0.7500 0.7500 0.7500 12 8vdi:C
6 8ej6:C 16 16 0.7500 0.7500 0.7500 12
7 8ekj:C 16 16 0.7500 0.7500 0.7500 12
8 8eku:C 16 16 0.7500 0.7500 0.7500 12
9 8em9:C 16 16 0.7500 0.7500 0.7500 12
10 8eqg:C 16 16 0.7500 0.7500 0.7500 12
11 8vdh:C 16 16 0.7500 0.7500 0.7500 12
12 8e3k:C 16 16 0.6875 0.6875 0.6875 7 8e5y:C, 8emd:C, 8eng:C, 8eo1:C, 8eo4:C, 8smh:C, 8sp1:C, 8t9u:C
13 8ebh:C 16 16 0.6875 0.6875 0.6875 7 8ek3:C, 8smj:C
14 8ekv:C 16 16 0.6875 0.6875 0.6875 7
15 8eqk:C 16 16 0.6875 0.6875 0.6875 7 8eql:C
16 1pue:A 16 16 0.6250 0.6250 0.6250 2 1pue:C
17 1cit:B 16 16 0.5625 0.5625 0.5625 -3 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
18 4q5s:H 16 16 0.5625 0.5625 0.5625 -3
19 8ekz:C 16 16 0.5625 0.5625 0.5625 -3
20 9cex:A 16 16 0.5625 0.5625 0.5625 -3 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
21 8tlq:T 15 15 0.6875 0.7333 0.7333 -5 8tlt:T, 6v93:T
22 7s0t:T 14 14 0.6875 0.7857 0.7857 -6
23 2kdz:B 16 16 0.5000 0.5000 0.5000 -8 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
24 6xnx:M 16 16 0.5000 0.5000 0.5000 -8 6xny:M
25 7k0y:G 16 16 0.5000 0.5000 0.5000 -8 7k19:G, 7k1b:G, 7k1k:G, 7k1n:G, 7su3:G
26 7riw:N 16 16 0.5000 0.5000 0.5000 -8
27 7yi2:G 16 16 0.5000 0.5000 0.5000 -8
28 3ei2:G 15 15 0.6250 0.6667 0.6667 -10
29 5m5w:S 18 16 0.6875 0.6111 0.6875 -12
30 7z2z:S 18 16 0.6875 0.6111 0.6875 -12
31 9baq:G 18 16 0.6875 0.6111 0.6875 -12
32 1g4d:C 16 16 0.4375 0.4375 0.4375 -13
33 1n4l:B 16 16 0.4375 0.4375 0.4375 -13
34 2aq4:T 16 16 0.4375 0.4375 0.4375 -13 3bjy:T, 3gqc:F, 3gqc:H, 3gqc:J, 3gqc:L, 3iay:T
35 3g6t:C 16 16 0.4375 0.4375 0.4375 -13
36 3oqo:B 16 16 0.4375 0.4375 0.4375 -13 1rzr:H, 1rzr:E
37 3osp:T 16 16 0.4375 0.4375 0.4375 -13
38 5zmc:C 16 16 0.4375 0.4375 0.4375 -13
39 6bqu:C 16 16 0.4375 0.4375 0.4375 -13 6bsf:C
40 6g1l:B 16 16 0.4375 0.4375 0.4375 -13
41 6ovy:H 16 16 0.4375 0.4375 0.4375 -13
42 6p71:H 16 16 0.4375 0.4375 0.4375 -13
43 6ryd:C 16 16 0.4375 0.4375 0.4375 -13 6ryd:G
44 6ryi:F 16 16 0.4375 0.4375 0.4375 -13
45 6uq1:N 16 16 0.4375 0.4375 0.4375 -13 6uq3:N
46 7oyk:EEE 16 16 0.4375 0.4375 0.4375 -13 7oyk:LLL, 7oyk:GGG
47 7q0j:N 16 16 0.4375 0.4375 0.4375 -13
48 7upz:C 16 16 0.4375 0.4375 0.4375 -13
49 7yq8:D 16 16 0.4375 0.4375 0.4375 -13
50 8cyf:C 16 16 0.4375 0.4375 0.4375 -13
51 9bvd:G 16 16 0.4375 0.4375 0.4375 -13
52 4js4:C 15 15 0.5625 0.6000 0.6000 -15 8s4t:D, 6vaa:Y
53 5z00:F 15 15 0.5625 0.6000 0.6000 -15
54 6j9a:C 15 15 0.5625 0.6000 0.6000 -15 6j9b:C, 6j9b:F
55 4js4:D 14 14 0.5625 0.6429 0.6429 -16
56 5m5y:S 19 16 0.6875 0.5789 0.6875 -16 5m64:S
57 7pu7:T 19 16 0.6875 0.5789 0.6875 -16
58 8hcm:B 14 14 0.5625 0.6429 0.6429 -16
59 4jrq:C 13 13 0.5625 0.6923 0.6923 -17 4jrq:D
60 7l4m:C 18 16 0.6250 0.5556 0.6250 -17 7l4m:E
61 1ckt:C 16 16 0.3750 0.3750 0.3750 -18
62 1d2i:C 16 16 0.3750 0.3750 0.3750 -18 1d2i:D, 1dfm:C, 1dfm:D
63 1dct:G 16 16 0.3750 0.3750 0.3750 -18
64 1drg:B 16 16 0.3750 0.3750 0.3750 -18 1f44:M
65 1g2d:A 16 16 0.3750 0.3750 0.3750 -18 1g2d:D, 1g2f:A, 1g2f:D
66 1lq1:F 16 16 0.3750 0.3750 0.3750 -18 1lq1:H
67 1yfh:D 16 16 0.3750 0.3750 0.3750 -18 1yfh:F
68 1zvv:O 16 16 0.3750 0.3750 0.3750 -18 1zvv:T, 1zvv:R
69 2bnz:E 17 16 0.5625 0.5294 0.5625 -18
70 2d45:E 16 16 0.3750 0.3750 0.3750 -18 2d45:F, 1xsd:B
71 2e42:D 16 16 0.3750 0.3750 0.3750 -18 2e43:D, 1gu4:D
72 2fvr:B 16 16 0.3750 0.3750 0.3750 -18
73 2ko0:B 16 16 0.3750 0.3750 0.3750 -18 2l1g:B
74 2ntz:Y 16 16 0.3750 0.3750 0.3750 -18 2ntz:E
75 2oyq:E 16 16 0.3750 0.3750 0.3750 -18
76 2wt7:C 16 16 0.3750 0.3750 0.3750 -18
77 3bs1:B 16 16 0.3750 0.3750 0.3750 -18
78 3fyl:C 16 16 0.3750 0.3750 0.3750 -18 3g9m:C, 3g9o:D, 3g9p:D
79 3g6q:C 16 16 0.3750 0.3750 0.3750 -18 3g6u:D
80 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
81 3gpy:B 16 16 0.3750 0.3750 0.3750 -18
82 3l8b:C 16 16 0.3750 0.3750 0.3750 -18 3l8b:E
83 3rma:I 17 16 0.5625 0.5294 0.5625 -18
84 3sq2:T 16 16 0.3750 0.3750 0.3750 -18 3sun:T, 3suq:T
85 4atk:C 16 16 0.3750 0.3750 0.3750 -18 4atk:D, 5eyo:B, 5eyo:D
86 4dfj:C 16 16 0.3750 0.3750 0.3750 -18 4dfk:C, 5e41:C, 4elt:C, 3m8r:C, 3m8s:C, 3ojs:C
87 4e3s:T 17 16 0.5625 0.5294 0.5625 -18
88 4fbt:T 16 16 0.3750 0.3750 0.3750 -18
89 4fjl:T 16 16 0.3750 0.3750 0.3750 -18 4fjn:T
90 4lvk:C 16 16 0.3750 0.3750 0.3750 -18 4lvm:E
91 4lvl:C 16 16 0.3750 0.3750 0.3750 -18
92 4m3y:T 16 16 0.3750 0.3750 0.3750 -18
93 4osk:G 16 16 0.3750 0.3750 0.3750 -18
94 4s2q:B 16 16 0.3750 0.3750 0.3750 -18
95 4xyq:B 16 16 0.3750 0.3750 0.3750 -18
96 5e69:C 16 16 0.3750 0.3750 0.3750 -18
97 5iud:E 16 16 0.3750 0.3750 0.3750 -18
98 5m1s:P 17 16 0.5625 0.5294 0.5625 -18
99 6a57:C 16 16 0.3750 0.3750 0.3750 -18
100 6ako:A 16 16 0.3750 0.3750 0.3750 -18 7cby:B, 3co7:B, 3co7:E, 5x07:E, 5x07:B, 5x07:H, 5x07:K
101 6blw:B 16 16 0.3750 0.3750 0.3750 -18
102 6bse:C 16 16 0.3750 0.3750 0.3750 -18
103 6ct9:C 16 16 0.3750 0.3750 0.3750 -18 6cta:C, 7ftn:B
104 6fbg:C 16 16 0.3750 0.3750 0.3750 -18
105 6fqp:L 16 16 0.3750 0.3750 0.3750 -18 6fqp:M, 6fqq:L, 6fqq:M, 6fqq:G, 6fqq:H
106 6khy:G 16 16 0.3750 0.3750 0.3750 -18
107 6nce:C 16 16 0.3750 0.3750 0.3750 -18
108 6ozf:D 12 12 0.5625 0.7500 0.7500 -18
109 6put:F 16 16 0.3750 0.3750 0.3750 -18
110 6py8:A 16 16 0.3750 0.3750 0.3750 -18 6py8:X
111 6ryi:G 16 16 0.3750 0.3750 0.3750 -18
112 6ryl:G 16 16 0.3750 0.3750 0.3750 -18 6ryl:I
113 6wmi:C 17 16 0.5625 0.5294 0.5625 -18 6wmi:F
114 7d8t:D 16 16 0.3750 0.3750 0.3750 -18
115 7n5w:X 16 16 0.3750 0.3750 0.3750 -18
116 7ol9:C 16 16 0.3750 0.3750 0.3750 -18 7ol9:D
117 7owf:C 16 16 0.3750 0.3750 0.3750 -18
118 7sba:X 16 16 0.3750 0.3750 0.3750 -18
119 7txc:A 16 16 0.3750 0.3750 0.3750 -18
120 7vou:B 16 16 0.3750 0.3750 0.3750 -18
121 7yz7:C 16 16 0.3750 0.3750 0.3750 -18
122 7yza:C 16 16 0.3750 0.3750 0.3750 -18
123 7yzc:C 16 16 0.3750 0.3750 0.3750 -18 7yzf:B
124 7z5a:E 16 16 0.3750 0.3750 0.3750 -18
125 7zwa:E 16 16 0.3750 0.3750 0.3750 -18
126 8ac1:T 16 16 0.3750 0.3750 0.3750 -18 8acp:T
127 8fs6:J 16 16 0.3750 0.3750 0.3750 -18 8fs7:J
128 2h1k:C 15 15 0.5000 0.5333 0.5333 -20 2h1k:E
129 4ptf:T 15 15 0.5000 0.5333 0.5333 -20
130 5d4c:H 20 16 0.6875 0.5500 0.6875 -20
131 6bda:D 15 15 0.5000 0.5333 0.5333 -20
132 6k2j:E 15 15 0.5000 0.5333 0.5333 -20
133 6p1h:T 15 15 0.5000 0.5333 0.5333 -20
134 6uq0:N 15 15 0.5000 0.5333 0.5333 -20
135 6xnz:M 15 15 0.5000 0.5333 0.5333 -20
136 7n8s:D 15 15 0.5000 0.5333 0.5333 -20
137 7rim:N 15 15 0.5000 0.5333 0.5333 -20
138 8e66:B 15 15 0.5000 0.5333 0.5333 -20 8e66:D
139 8e67:B 15 15 0.5000 0.5333 0.5333 -20 8e67:D, 8e67:J
140 8k8s:F 15 15 0.5000 0.5333 0.5333 -20 8k8u:F
141 9ant:C 15 15 0.5000 0.5333 0.5333 -20 9ant:E, 5jlw:B, 5jlw:E, 5jlx:B, 5jlx:E, 4xic:B, 4xic:E, 4xid:B, 4xid:E
142 1fjl:D 14 14 0.5000 0.5714 0.5714 -21
143 1flo:J 19 16 0.6250 0.5263 0.6250 -21 1flo:L, 1m6x:I
144 2drp:B 19 16 0.6250 0.5263 0.6250 -21 2drp:E
145 2xzf:C 14 14 0.5000 0.5714 0.5714 -21
146 3bep:D 14 14 0.5000 0.5714 0.5714 -21
147 4lvm:F 14 14 0.5000 0.5714 0.5714 -21
148 5cqq:D 19 16 0.6250 0.5263 0.6250 -21 5cqq:F
149 5zoe:D 14 14 0.5000 0.5714 0.5714 -21 5zof:D
150 6kc8:P 14 14 0.5000 0.5714 0.5714 -21
151 6ow3:H 19 16 0.6250 0.5263 0.6250 -21
152 6rks:F 14 14 0.5000 0.5714 0.5714 -21 6rks:E, 6rku:F, 6rku:E, 6rkv:F, 6rkv:E
153 7jm4:D 19 16 0.6250 0.5263 0.6250 -21 7jm4:C, 7rh2:C, 7rh2:D
154 7lsy:M 14 14 0.5000 0.5714 0.5714 -21
155 7ut1:k 14 14 0.5000 0.5714 0.5714 -21 7ut1:K
156 1dct:F 18 16 0.5625 0.5000 0.5625 -22
157 1iv6:B 13 13 0.5000 0.6154 0.6154 -22 1vfc:B
158 1kfv:E 13 13 0.5000 0.6154 0.6154 -22 1kfv:H
159 3rma:G 13 13 0.5000 0.6154 0.6154 -22 3rmd:E
160 3sav:C 13 13 0.5000 0.6154 0.6154 -22
161 4xrs:E 18 16 0.5625 0.5000 0.5625 -22
162 5a39:G 13 13 0.5000 0.6154 0.6154 -22 5a39:H
163 5d4c:S 18 16 0.5625 0.5000 0.5625 -22
164 5yzy:B 13 13 0.5000 0.6154 0.6154 -22 5yzz:B
165 6dfc:E 18 16 0.5625 0.5000 0.5625 -22
166 6qhd:C 18 16 0.5625 0.5000 0.5625 -22
167 6u9q:B 13 13 0.5000 0.6154 0.6154 -22
168 7cuh:B 18 16 0.5625 0.5000 0.5625 -22
169 7kuf:C 18 16 0.5625 0.5000 0.5625 -22
170 7l4f:C 18 16 0.5625 0.5000 0.5625 -22 7l4f:E
171 7m5w:B 18 16 0.5625 0.5000 0.5625 -22
172 7mlb:H 18 16 0.5625 0.5000 0.5625 -22
173 8ftj:F 13 13 0.5000 0.6154 0.6154 -22
174 8twb:T 18 16 0.5625 0.5000 0.5625 -22
175 1ais:E 17 16 0.5000 0.4706 0.5000 -23
176 1dp7:D 16 16 0.2500 0.2500 0.2500 -23
177 1gtw:C 16 16 0.3125 0.3125 0.3125 -23
178 1hjc:B 16 16 0.3125 0.3125 0.3125 -23 1hjc:E
179 1jh9:B 17 16 0.5000 0.4706 0.5000 -23 1pnr:B, 1wet:B
180 1nh2:E 16 16 0.3125 0.3125 0.3125 -23
181 1nk2:A 16 16 0.3125 0.3125 0.3125 -23 1nk3:A
182 1qp9:H 17 16 0.5000 0.4706 0.5000 -23
183 1r71:E 17 16 0.5000 0.4706 0.5000 -23 1r71:J, 1r71:G, 1r71:K
184 1vol:C 16 16 0.3125 0.3125 0.3125 -23
185 1ytf:E 16 16 0.3125 0.3125 0.3125 -23
186 1zrf:Y 16 16 0.3125 0.3125 0.3125 -23
187 2dy4:E 17 16 0.5000 0.4706 0.5000 -23
188 2e42:C 16 16 0.3125 0.3125 0.3125 -23 2e43:C, 1gu4:C
189 2fvq:B 16 16 0.3125 0.3125 0.3125 -23
190 2fvs:B 16 16 0.3125 0.3125 0.3125 -23
191 2gzk:B 16 16 0.3125 0.3125 0.3125 -23
192 2hdc:B 17 16 0.5000 0.4706 0.5000 -23
193 2kdz:C 16 16 0.3125 0.3125 0.3125 -23 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
194 2kmk:B 16 16 0.3125 0.3125 0.3125 -23
195 2kmk:C 16 16 0.3125 0.3125 0.3125 -23
196 2ql2:F 16 16 0.3125 0.3125 0.3125 -23 2ql2:H
197 2qnf:C 16 16 0.3125 0.3125 0.3125 -23
198 2qnf:F 16 16 0.3125 0.3125 0.3125 -23
199 2z33:B 16 16 0.3125 0.3125 0.3125 -23
200 2z33:C 16 16 0.3125 0.3125 0.3125 -23
201 3cmx:F 12 12 0.5000 0.6667 0.6667 -23 4hcb:C, 4hcb:D, 3r8f:E
202 3coa:B 16 16 0.3125 0.3125 0.3125 -23 3coa:E
203 3dpg:D 16 16 0.3125 0.3125 0.3125 -23
204 3f73:C 16 16 0.3125 0.3125 0.3125 -23
205 3g6q:D 16 16 0.3125 0.3125 0.3125 -23 3g6u:C
206 3g99:C 16 16 0.3125 0.3125 0.3125 -23 3g9i:C
207 3g99:D 16 16 0.3125 0.3125 0.3125 -23 3g9i:D
208 3hm9:X 16 16 0.3125 0.3125 0.3125 -23 3hvr:C, 3hvr:M, 4kpy:C, 4kpy:E, 4n41:E, 4nca:C, 4nca:E, 4ncb:C
209 3igc:D 16 16 0.3125 0.3125 0.3125 -23
210 3jtg:C 16 16 0.3125 0.3125 0.3125 -23
211 3n78:C 16 16 0.3125 0.3125 0.3125 -23 3n7b:C
212 3oqm:B 16 16 0.3125 0.3125 0.3125 -23
213 3oqn:E 16 16 0.3125 0.3125 0.3125 -23
214 3px0:C 12 12 0.5000 0.6667 0.6667 -23 3px0:F, 3px4:F, 3px6:C, 3px6:F
215 3rnu:K 16 16 0.3125 0.3125 0.3125 -23
216 3saw:B 12 12 0.5000 0.6667 0.6667 -23
217 3spz:T 16 16 0.3125 0.3125 0.3125 -23
218 3sq4:T 16 16 0.3125 0.3125 0.3125 -23 3suo:T, 3sup:T
219 4ati:C 16 16 0.3125 0.3125 0.3125 -23
220 4df8:C 16 16 0.3125 0.3125 0.3125 -23 5szt:C, 5yte:C
221 4dfm:C 16 16 0.3125 0.3125 0.3125 -23 4elu:C, 5o7t:C, 5oxj:C, 3rtv:C
222 4dfp:C 16 16 0.3125 0.3125 0.3125 -23 5nkl:C, 3syz:C, 5ytc:C, 5ytd:C
223 4dle:C 16 16 0.3125 0.3125 0.3125 -23
224 4dtn:T 17 16 0.5000 0.4706 0.5000 -23 4dto:T, 4dtp:T
225 4ez9:F 12 12 0.5000 0.6667 0.6667 -23
226 4fj9:T 17 16 0.5000 0.4706 0.5000 -23
227 4fji:T 17 16 0.5000 0.4706 0.5000 -23 3qno:T
228 4fjk:T 16 16 0.3125 0.3125 0.3125 -23
229 4fk2:T 17 16 0.5000 0.4706 0.5000 -23 4fk4:T
230 4g7h:G 16 16 0.3125 0.3125 0.3125 -23 4g7h:Q, 4g7o:G, 4g7o:Q, 6l74:G, 4oin:G, 4oio:G, 4oip:G, 4oiq:G, 4oir:G
231 4g7z:G 16 16 0.3125 0.3125 0.3125 -23 4g7z:Q
232 4gjp:H 16 16 0.3125 0.3125 0.3125 -23 6lew:J, 6lew:D
233 4l0y:D 16 16 0.3125 0.3125 0.3125 -23 4l0z:D, 4l18:D, 4l18:H, 3ri4:C, 3ri4:F, 6vg2:B, 6vg2:E, 6vg8:B, 6vgd:B, 6vge:B, 6vgg:B, 3wu1:D
234 4m3r:T 16 16 0.3125 0.3125 0.3125 -23
235 4m3u:T 17 16 0.5000 0.4706 0.5000 -23
236 4m3w:T 17 16 0.5000 0.4706 0.5000 -23
237 4m41:T 17 16 0.5000 0.4706 0.5000 -23
238 4m42:T 17 16 0.5000 0.4706 0.5000 -23
239 4osh:J 16 16 0.3125 0.3125 0.3125 -23 4osj:J
240 4osj:H 16 16 0.3125 0.3125 0.3125 -23 4osr:H, 4ost:H, 4ot0:H, 4ot3:H
241 4oss:H 16 16 0.3125 0.3125 0.3125 -23
242 4p0p:E 16 16 0.3125 0.3125 0.3125 -23
243 4qtk:C 17 16 0.5000 0.4706 0.5000 -23 4qtk:E
244 4qw8:D 16 16 0.3125 0.3125 0.3125 -23 4qw9:D, 4qwa:D, 4qwd:D, 4qwe:D
245 4tnt:D 17 16 0.5000 0.4706 0.5000 -23
246 4v8s:BS 16 16 0.3125 0.3125 0.3125 -23
247 4xrs:L 16 16 0.3125 0.3125 0.3125 -23
248 5c4a:S 16 16 0.3125 0.3125 0.3125 -23
249 5cc0:D 16 16 0.3125 0.3125 0.3125 -23 4hn5:D, 4hn6:D
250 5gq9:C 16 16 0.3125 0.3125 0.3125 -23 5gq9:E
251 5hp4:X 17 16 0.5000 0.4706 0.5000 -23
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1000 4b9m:C 12 12 0.3750 0.5000 0.5000 -33

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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