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BioLiP
>dna
aagtacctcccaactacttttcctcacacttgtactcca

The query sequence (length=39) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rql:U 42 39 1.0000 0.9286 1.0000 3.98e-16
2 6rql:T 42 39 1.0000 0.9286 1.0000 3.98e-16
3 6rqh:U 39 39 1.0000 1.0000 1.0000 3.98e-16
4 6rqh:T 39 39 1.0000 1.0000 1.0000 3.98e-16
5 6ruo:T 50 35 0.8974 0.7000 1.0000 6.67e-14 6rwe:T
6 6rrd:U 48 35 0.8974 0.7292 1.0000 6.67e-14
7 6rrd:T 51 33 0.8462 0.6471 1.0000 8.62e-13
8 5w5y:T 54 32 0.8205 0.5926 1.0000 3.10e-12 5w64:T, 5w65:T, 5w66:T
9 6rui:U 46 32 0.8205 0.6957 1.0000 3.10e-12
10 6rui:T 48 32 0.8205 0.6667 1.0000 3.10e-12
11 6rwe:U 45 30 0.7692 0.6667 1.0000 4.01e-11
12 6ruo:U 43 34 0.8462 0.7674 0.9706 4.01e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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