Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred TCRfinder

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA DeepMSA2 FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>dna
aagggcgcctataaaagggggtgggggcgcgttcgtcctcagtcgcgatcgaacactcgagccgagcagac

The query sequence (length=71) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iyc:Y 80 71 1.0000 0.8875 1.0000 1.37e-33 5iyd:Y
2 5iyb:Y 75 71 1.0000 0.9467 1.0000 1.37e-33
3 5iy7:Y 77 71 1.0000 0.9221 1.0000 1.37e-33
4 7eg7:Y 71 71 1.0000 1.0000 1.0000 1.37e-33
5 7eg7:X 71 71 1.0000 1.0000 1.0000 1.37e-33
6 5fur:F 80 70 0.9859 0.8750 1.0000 4.93e-33 6mzm:U
7 5fur:E 80 70 0.9859 0.8750 1.0000 4.93e-33 6mzm:V
8 7eg9:Y 71 70 0.9859 0.9859 1.0000 4.93e-33
9 7eg9:X 71 70 0.9859 0.9859 1.0000 4.93e-33
10 7egb:Y 69 69 0.9718 1.0000 1.0000 1.77e-32 7ena:Y, 7enc:Y
11 7egb:X 69 69 0.9718 1.0000 1.0000 1.77e-32 7ena:X, 7enc:X
12 5iy8:Y 83 71 0.9859 0.8434 0.9859 6.38e-32 5iy9:Y
13 5iy6:Y 65 64 0.9014 0.9846 1.0000 1.07e-29 6o9l:Y
14 5iy6:X 65 64 0.9014 0.9846 1.0000 1.07e-29 6o9l:X
15 7egj:Y 74 64 0.9014 0.8649 1.0000 1.07e-29
16 7egj:X 74 64 0.9014 0.8649 1.0000 1.07e-29
17 7lbm:V 64 63 0.8873 0.9844 1.0000 3.84e-29
18 7lbm:U 64 63 0.8873 0.9844 1.0000 3.84e-29
19 7egd:Y 72 63 0.8873 0.8750 1.0000 3.84e-29
20 7egd:X 72 63 0.8873 0.8750 1.0000 3.84e-29
21 5iya:Y 59 58 0.8169 0.9831 1.0000 2.31e-26
22 5iya:X 59 58 0.8169 0.9831 1.0000 2.31e-26
23 8gxq:Y 67 67 0.8873 0.9403 0.9403 3.87e-24 8gxs:Y
24 8gxq:X 67 67 0.8873 0.9403 0.9403 3.87e-24 8gxs:X
25 5iyb:X 75 73 0.9014 0.8533 0.8767 1.40e-18
26 5iy7:X 77 73 0.9014 0.8312 0.8767 1.40e-18
27 7egh:Y 45 36 0.5070 0.8000 1.0000 3.92e-14
28 7egh:X 45 36 0.5070 0.8000 1.0000 3.92e-14
29 7nvt:T 50 44 0.5775 0.8200 0.9318 1.41e-13
30 7nvt:N 50 41 0.5493 0.7800 0.9512 1.41e-13
31 7nvs:T 49 44 0.5775 0.8367 0.9318 1.41e-13
32 7nvs:N 49 41 0.5493 0.7959 0.9512 1.41e-13
33 7nvr:T 64 44 0.5775 0.6406 0.9318 1.41e-13 7nvy:T, 7nvz:T
34 7nvr:N 64 41 0.5493 0.6094 0.9512 1.41e-13 7nvy:N, 7nvz:N
35 8byq:T 198 44 0.5775 0.2071 0.9318 1.41e-13 8bz1:T
36 8byq:N 198 41 0.5493 0.1970 0.9512 1.41e-13 8bz1:N
37 8bvw:T 206 44 0.5775 0.1990 0.9318 1.41e-13
38 8bvw:N 206 41 0.5493 0.1893 0.9512 1.41e-13
39 5iyc:X 80 29 0.4085 0.3625 1.0000 3.06e-10 5iyd:X
40 5iy8:X 83 29 0.4085 0.3494 1.0000 3.06e-10 5iy9:X

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417