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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9cl9:2 (5.04) BS01 rna N/A N/A P0A7P5 N/A
    2 9cl9:A (5.04) BS01 rna N/A GO:0000455 ... P37765 N/A
    3 9cl9:D (5.04) BS01 rna N/A GO:0000027 ... P60438 N/A
    4 9cl9:E (5.04) BS01 rna N/A GO:0001070 ... P60723 N/A
    5 9cl9:J (5.04) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    6 9cl9:Q (5.04) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    7 9cl9:R (5.04) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    8 9cl9:S (5.04) BS01 rna N/A GO:0002181 ... P61175 N/A
    9 9cl9:T (5.04) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    10 9cl9:U (5.04) BS01 rna N/A GO:0000027 ... P60624 N/A
    11 9cl9:Y (5.04) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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