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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9c4g:0 (2.53) BS01 rna N/A N/A A0A2C6LJM0 39122144
    2 9c4g:0 (2.53) BS02 ZN N/A N/A A0A2C6LJM0 39122144
    3 9c4g:1 (2.53) BS01 rna N/A N/A A0A2B7IDI8 39122144
    4 9c4g:2 (2.53) BS01 rna N/A N/A Q6A7V2 39122144
    5 9c4g:3 (2.53) BS01 rna N/A N/A A0A2B7JN22 39122144
    6 9c4g:4 (2.53) BS01 ZN N/A N/A A0A2B7JUW7 39122144
    7 9c4g:c (2.53) BS01 rna N/A N/A A0A2B7JMV5 39122144
    8 9c4g:d (2.53) BS01 rna N/A N/A A0A1G9KW65 39122144
    9 9c4g:e (2.53) BS01 rna N/A N/A A0A2B7I5M5 39122144
    10 9c4g:f (2.53) BS01 rna N/A N/A A0A3E2DDM1 39122144
    11 9c4g:f (2.53) BS02 rna N/A N/A A0A3E2DDM1 39122144
    12 9c4g:g (2.53) BS01 rna N/A N/A A0A2B7I5S3 39122144
    13 9c4g:i (2.53) BS01 rna N/A N/A A0A2B7I6I7 39122144
    14 9c4g:j (2.53) BS01 rna N/A N/A A0A2B7JMZ8 39122144
    15 9c4g:k (2.53) BS01 rna N/A N/A A0A2B7IUA0 39122144
    16 9c4g:l (2.53) BS01 rna N/A N/A A0A2B7I5M8 39122144
    17 9c4g:l (2.53) BS02 rna N/A N/A A0A2B7I5M8 39122144
    18 9c4g:m (2.53) BS01 rna N/A N/A A0A8B2VJI7 39122144
    19 9c4g:n (2.53) BS01 rna N/A N/A A0A2B7JN02 39122144
    20 9c4g:n (2.53) BS02 rna N/A N/A A0A2B7JN02 39122144
    21 9c4g:o (2.53) BS01 rna N/A N/A A0A2C6LKT3 39122144
    22 9c4g:p (2.53) BS01 rna N/A N/A A0A2B7I6V3 39122144
    23 9c4g:q (2.53) BS01 rna N/A N/A Q6A9I3 39122144
    24 9c4g:r (2.53) BS01 rna N/A N/A A0A2B7ITY5 39122144
    25 9c4g:s (2.53) BS01 rna N/A N/A A0A2C6LEQ5 39122144
    26 9c4g:t (2.53) BS01 rna N/A N/A Q6A6N7 39122144
    27 9c4g:u (2.53) BS01 rna N/A N/A A0A2B7IYF8 39122144
    28 9c4g:u (2.53) BS02 rna N/A N/A A0A2B7IYF8 39122144
    29 9c4g:v (2.53) BS01 rna N/A N/A A0A2B7IGT1 39122144
    30 9c4g:v (2.53) BS02 rna N/A N/A A0A2B7IGT1 39122144
    31 9c4g:w (2.53) BS01 rna N/A N/A A0A2B7I7B7 39122144
    32 9c4g:w (2.53) BS02 ZN N/A N/A A0A2B7I7B7 39122144
    33 9c4g:x (2.53) BS01 rna N/A N/A A0A2B7JB12 39122144
    34 9c4g:y (2.53) BS01 rna N/A N/A A0A2B7I5Y4 39122144
    35 9c4g:y (2.53) BS02 rna N/A N/A A0A2B7I5Y4 39122144
    36 9c4g:z (2.53) BS01 rna N/A N/A A0A2B7I771 39122144
    37 9c4g:z (2.53) BS02 ZN N/A N/A A0A2B7I771 39122144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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