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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    2 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    3 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    4 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    5 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    6 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    7 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    8 9brd:f (3.5) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    9 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    10 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    11 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    12 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    13 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    14 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    15 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    16 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    17 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    18 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    19 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    20 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    21 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    22 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    23 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    24 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    25 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    26 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    27 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    28 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    29 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    30 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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