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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8xgc:2 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    2 8xgc:2 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    3 8xgc:2 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    4 8xgc:2 (3.7) BS04 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    5 8xgc:3 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    6 8xgc:3 (3.7) BS02 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    7 8xgc:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    8 8xgc:3 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    9 8xgc:4 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P30665 38448592
    10 8xgc:4 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38448592
    11 8xgc:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38448592
    12 8xgc:5 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38448592
    13 8xgc:5 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    14 8xgc:5 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 38448592
    15 8xgc:5 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    16 8xgc:6 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38448592
    17 8xgc:6 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    18 8xgc:6 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 38448592
    19 8xgc:6 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    20 8xgc:7 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    21 8xgc:7 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    22 8xgc:7 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    23 8xgc:8 (3.7) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    24 8xgc:8 (3.7) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    25 8xgc:I (3.7) BS01 peptide ? GO:0000076 ... P53840 38448592
    26 8xgc:I (3.7) BS02 dna ? GO:0000076 ... P53840 38448592
    27 8xgc:I (3.7) BS03 dna ? GO:0000076 ... P53840 38448592
    28 8xgc:J (3.7) BS01 dna ? GO:0000076 ... Q04659 38448592
    29 8xgc:J (3.7) BS02 dna ? GO:0000076 ... Q04659 38448592
    30 8xgc:M (3.7) BS01 dna ? GO:0000785 ... Q04636 38448592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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