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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8kde:A (2.6) BS01 CLA N/A GO:0005506 ... P07753 38890314
    2 8kde:A (2.6) BS02 PHO N/A GO:0005506 ... P07753 38890314
    3 8kde:A (2.6) BS03 PHO N/A GO:0005506 ... P07753 38890314
    4 8kde:A (2.6) BS04 CLA N/A GO:0005506 ... P07753 38890314
    5 8kde:A (2.6) BS05 BCT N/A GO:0005506 ... P07753 38890314
    6 8kde:A (2.6) BS06 FE2 N/A GO:0005506 ... P07753 38890314
    7 8kde:A (2.6) BS07 CLA N/A GO:0005506 ... P07753 38890314
    8 8kde:A (2.6) BS08 CLA N/A GO:0005506 ... P07753 38890314
    9 8kde:A (2.6) BS09 CLA N/A GO:0005506 ... P07753 38890314
    10 8kde:B (2.6) BS01 CLA N/A GO:0009507 ... P37255 38890314
    11 8kde:B (2.6) BS02 CLA N/A GO:0009507 ... P37255 38890314
    12 8kde:B (2.6) BS03 CLA N/A GO:0009507 ... P37255 38890314
    13 8kde:B (2.6) BS04 CLA N/A GO:0009507 ... P37255 38890314
    14 8kde:B (2.6) BS05 CLA N/A GO:0009507 ... P37255 38890314
    15 8kde:B (2.6) BS06 CLA N/A GO:0009507 ... P37255 38890314
    16 8kde:B (2.6) BS07 CLA N/A GO:0009507 ... P37255 38890314
    17 8kde:B (2.6) BS08 CLA N/A GO:0009507 ... P37255 38890314
    18 8kde:B (2.6) BS09 CLA N/A GO:0009507 ... P37255 38890314
    19 8kde:B (2.6) BS10 CLA N/A GO:0009507 ... P37255 38890314
    20 8kde:B (2.6) BS11 CLA N/A GO:0009507 ... P37255 38890314
    21 8kde:B (2.6) BS12 CLA N/A GO:0009507 ... P37255 38890314
    22 8kde:B (2.6) BS13 CLA N/A GO:0009507 ... P37255 38890314
    23 8kde:B (2.6) BS14 CLA N/A GO:0009507 ... P37255 38890314
    24 8kde:B (2.6) BS15 CLA N/A GO:0009507 ... P37255 38890314
    25 8kde:C (2.6) BS01 CLA N/A GO:0005737 ... P10898 38890314
    26 8kde:C (2.6) BS02 CLA N/A GO:0005737 ... P10898 38890314
    27 8kde:C (2.6) BS03 CLA N/A GO:0005737 ... P10898 38890314
    28 8kde:C (2.6) BS04 CLA N/A GO:0005737 ... P10898 38890314
    29 8kde:C (2.6) BS05 CLA N/A GO:0005737 ... P10898 38890314
    30 8kde:C (2.6) BS06 CLA N/A GO:0005737 ... P10898 38890314
    31 8kde:C (2.6) BS07 CLA N/A GO:0005737 ... P10898 38890314
    32 8kde:C (2.6) BS08 CLA N/A GO:0005737 ... P10898 38890314
    33 8kde:C (2.6) BS09 CLA N/A GO:0005737 ... P10898 38890314
    34 8kde:C (2.6) BS10 CLA N/A GO:0005737 ... P10898 38890314
    35 8kde:C (2.6) BS11 CLA N/A GO:0005737 ... P10898 38890314
    36 8kde:C (2.6) BS12 CLA N/A GO:0005737 ... P10898 38890314
    37 8kde:C (2.6) BS13 CLA N/A GO:0005737 ... P10898 38890314
    38 8kde:D (2.6) BS01 CLA N/A GO:0005506 ... P06007 38890314
    39 8kde:D (2.6) BS02 CLA N/A GO:0005506 ... P06007 38890314
    40 8kde:D (2.6) BS03 CLA N/A GO:0005506 ... P06007 38890314
    41 8kde:D (2.6) BS04 CLA N/A GO:0005506 ... P06007 38890314
    42 8kde:D (2.6) BS05 PHO N/A GO:0005506 ... P06007 38890314
    43 8kde:D (2.6) BS06 PHO N/A GO:0005506 ... P06007 38890314
    44 8kde:D (2.6) BS07 VTQ N/A GO:0005506 ... P06007 38890314
    45 8kde:D (2.6) BS08 BCT N/A GO:0005506 ... P06007 38890314
    46 8kde:D (2.6) BS09 FE2 N/A GO:0005506 ... P06007 38890314
    47 8kde:D (2.6) BS10 CLA N/A GO:0005506 ... P06007 38890314
    48 8kde:E (2.6) BS01 HEM N/A GO:0005506 ... P48268 38890314
    49 8kde:F (2.6) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    50 8kde:F (2.6) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    51 8kde:H (2.6) BS01 CLA N/A GO:0009507 ... P22666 38890314
    52 8kde:H (2.6) BS02 CLA N/A GO:0009507 ... P22666 38890314
    53 8kde:I (2.6) BS01 CLA N/A GO:0005737 ... P59763 38890314
    54 8kde:K (2.6) BS01 CLA N/A GO:0005737 ... P18263 38890314
    55 8kde:X (2.6) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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