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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8k2d:CD (3.2) BS01 rna N/A GO:0003746 ... P32324 38942792
    2 8k2d:CD (3.2) BS02 rna N/A GO:0003746 ... P32324 38942792
    3 8k2d:CD (3.2) BS03 GDP N/A GO:0003746 ... P32324 38942792
    4 8k2d:CE (3.2) BS01 rna N/A GO:0002182 ... P23301 38942792
    5 8k2d:CS (3.2) BS01 rna N/A GO:0000723 ... P39015 38942792
    6 8k2d:CS (3.2) BS02 rna N/A GO:0000723 ... P39015 38942792
    7 8k2d:L1 (3.2) BS01 rna N/A GO:0000055 ... P0CX43 38942792
    8 8k2d:LA (3.2) BS01 rna N/A GO:0002181 ... P0CX45 38942792
    9 8k2d:LB (3.2) BS01 rna N/A GO:0000027 ... P14126 38942792
    10 8k2d:LC (3.2) BS01 rna N/A GO:0002181 ... P10664 38942792
    11 8k2d:LC (3.2) BS02 rna N/A GO:0002181 ... P10664 38942792
    12 8k2d:LD (3.2) BS01 rna N/A GO:0000027 ... P26321 38942792
    13 8k2d:LD (3.2) BS02 rna N/A GO:0000027 ... P26321 38942792
    14 8k2d:LE (3.2) BS01 rna N/A GO:0000027 ... Q02326 38942792
    15 8k2d:LF (3.2) BS01 rna N/A GO:0000463 ... P05737 38942792
    16 8k2d:LF (3.2) BS02 rna N/A GO:0000463 ... P05737 38942792
    17 8k2d:LG (3.2) BS01 rna N/A GO:0000470 ... P17076 38942792
    18 8k2d:LG (3.2) BS02 rna N/A GO:0000470 ... P17076 38942792
    19 8k2d:LH (3.2) BS01 rna N/A GO:0002181 ... P05738 38942792
    20 8k2d:LI (3.2) BS01 rna N/A GO:0000027 ... P41805 38942792
    21 8k2d:LI (3.2) BS02 rna N/A GO:0000027 ... P41805 38942792
    22 8k2d:LJ (3.2) BS01 rna N/A GO:0000027 ... P0C0W9 38942792
    23 8k2d:LJ (3.2) BS02 rna N/A GO:0000027 ... P0C0W9 38942792
    24 8k2d:LK (3.2) BS01 rna N/A GO:0000027 ... P0CX53 38942792
    25 8k2d:LL (3.2) BS01 rna N/A GO:0002181 ... Q12690 38942792
    26 8k2d:LL (3.2) BS02 rna N/A GO:0002181 ... Q12690 38942792
    27 8k2d:LM (3.2) BS01 rna N/A GO:0000027 ... P36105 38942792
    28 8k2d:LN (3.2) BS01 rna N/A GO:0002181 ... P05748 38942792
    29 8k2d:LN (3.2) BS02 rna N/A GO:0002181 ... P05748 38942792
    30 8k2d:LO (3.2) BS01 rna N/A GO:0000470 ... P26784 38942792
    31 8k2d:LP (3.2) BS01 rna N/A GO:0000448 ... P05740 38942792
    32 8k2d:LP (3.2) BS02 rna N/A GO:0000448 ... P05740 38942792
    33 8k2d:LQ (3.2) BS01 rna N/A GO:0002181 ... P0CX49 38942792
    34 8k2d:LR (3.2) BS01 rna N/A GO:0002181 ... P0CX82 38942792
    35 8k2d:LS (3.2) BS01 rna N/A GO:0002181 ... P0CX23 38942792
    36 8k2d:LS (3.2) BS02 rna N/A GO:0002181 ... P0CX23 38942792
    37 8k2d:LT (3.2) BS01 rna N/A GO:0002181 ... Q02753 38942792
    38 8k2d:LT (3.2) BS02 rna N/A GO:0002181 ... Q02753 38942792
    39 8k2d:LU (3.2) BS01 rna N/A GO:0002181 ... P05749 38942792
    40 8k2d:LV (3.2) BS01 rna N/A GO:0002181 ... P0CX41 38942792
    41 8k2d:LV (3.2) BS02 rna N/A GO:0002181 ... P0CX41 38942792
    42 8k2d:LW (3.2) BS01 rna N/A GO:0002181 ... P04449 38942792
    43 8k2d:LX (3.2) BS01 rna N/A GO:0000027 ... P04456 38942792
    44 8k2d:LX (3.2) BS02 rna N/A GO:0000027 ... P04456 38942792
    45 8k2d:LY (3.2) BS01 rna N/A GO:0002181 ... P05743 38942792
    46 8k2d:LY (3.2) BS02 rna N/A GO:0002181 ... P05743 38942792
    47 8k2d:LZ (3.2) BS01 rna N/A GO:0002181 ... P0C2H6 38942792
    48 8k2d:La (3.2) BS01 rna N/A GO:0002181 ... P02406 38942792
    49 8k2d:Lb (3.2) BS01 rna N/A GO:0002181 ... P05747 38942792
    50 8k2d:Lc (3.2) BS01 rna N/A GO:0002181 ... P14120 38942792
    51 8k2d:Ld (3.2) BS01 rna N/A GO:0002181 ... P0C2H8 38942792
    52 8k2d:Le (3.2) BS01 rna N/A GO:0002181 ... P38061 38942792
    53 8k2d:Lf (3.2) BS01 rna N/A GO:0000027 ... P05744 38942792
    54 8k2d:Lg (3.2) BS01 rna N/A GO:0002181 ... P87262 38942792
    55 8k2d:Lg (3.2) BS02 ZN N/A GO:0002181 ... P87262 38942792
    56 8k2d:Lh (3.2) BS01 rna N/A GO:0000463 ... P0CX84 38942792
    57 8k2d:Lh (3.2) BS02 rna N/A GO:0000463 ... P0CX84 38942792
    58 8k2d:Li (3.2) BS01 rna N/A GO:0002181 ... P05745 38942792
    59 8k2d:Lj (3.2) BS01 rna N/A GO:0000448 ... P49166 38942792
    60 8k2d:Lj (3.2) BS02 rna N/A GO:0000448 ... P49166 38942792
    61 8k2d:Lj (3.2) BS03 T1C N/A GO:0000448 ... P49166 38942792
    62 8k2d:Lj (3.2) BS04 ZN N/A GO:0000448 ... P49166 38942792
    63 8k2d:Lk (3.2) BS01 rna N/A GO:0002181 ... P49167 38942792
    64 8k2d:Ll (3.2) BS01 rna N/A GO:0002181 ... P04650 38942792
    65 8k2d:Ll (3.2) BS02 rna N/A GO:0002181 ... P04650 38942792
    66 8k2d:Lm (3.2) BS01 rna N/A GO:0000027 ... P0CH08 38942792
    67 8k2d:Lm (3.2) BS02 ZN N/A GO:0000027 ... P0CH08 38942792
    68 8k2d:Lo (3.2) BS01 rna N/A GO:0002181 ... P0CX27 38942792
    69 8k2d:Lo (3.2) BS02 ZN N/A GO:0002181 ... P0CX27 38942792
    70 8k2d:Lp (3.2) BS01 rna N/A GO:0002181 ... P0CX25 38942792
    71 8k2d:Lp (3.2) BS02 ZN N/A GO:0002181 ... P0CX25 38942792
    72 8k2d:P0 (3.2) BS01 rna N/A GO:0000027 ... P05317 38942792
    73 8k2d:SA (3.2) BS01 rna N/A GO:0000028 ... P32905 38942792
    74 8k2d:SB (3.2) BS01 rna N/A GO:0000462 ... P33442 38942792
    75 8k2d:SC (3.2) BS01 rna N/A GO:0000054 ... P25443 38942792
    76 8k2d:SD (3.2) BS01 rna N/A GO:0000054 ... P05750 38942792
    77 8k2d:SE (3.2) BS01 rna N/A GO:0002181 ... P0CX35 38942792
    78 8k2d:SF (3.2) BS01 rna N/A GO:0000028 ... P26783 38942792
    79 8k2d:SG (3.2) BS01 rna N/A GO:0000462 ... P0CX37 38942792
    80 8k2d:SH (3.2) BS01 rna N/A GO:0002181 ... P26786 38942792
    81 8k2d:SI (3.2) BS01 rna N/A GO:0000462 ... P0CX39 38942792
    82 8k2d:SI (3.2) BS02 rna N/A GO:0000462 ... P0CX39 38942792
    83 8k2d:SJ (3.2) BS01 rna N/A GO:0000462 ... O13516 38942792
    84 8k2d:SK (3.2) BS01 rna N/A GO:0000054 ... Q08745 38942792
    85 8k2d:SL (3.2) BS01 rna N/A GO:0000028 ... P0CX47 38942792
    86 8k2d:SM (3.2) BS01 rna N/A GO:0000028 ... P48589 38942792
    87 8k2d:SN (3.2) BS01 rna N/A GO:0000462 ... P05756 38942792
    88 8k2d:SN (3.2) BS02 rna N/A GO:0000462 ... P05756 38942792
    89 8k2d:SO (3.2) BS01 rna N/A GO:0000028 ... P06367 38942792
    90 8k2d:SP (3.2) BS01 rna N/A GO:0000028 ... Q01855 38942792
    91 8k2d:SQ (3.2) BS01 rna N/A GO:0000462 ... P0CX51 38942792
    92 8k2d:SR (3.2) BS01 rna N/A GO:0000028 ... P02407 38942792
    93 8k2d:SS (3.2) BS01 rna N/A GO:0000054 ... P0CX55 38942792
    94 8k2d:ST (3.2) BS01 rna N/A GO:0000028 ... P07280 38942792
    95 8k2d:SU (3.2) BS01 rna N/A GO:0000462 ... P38701 38942792
    96 8k2d:SV (3.2) BS01 rna N/A GO:0000447 ... P0C0V8 38942792
    97 8k2d:SW (3.2) BS01 rna N/A GO:0002181 ... P0C0W1 38942792
    98 8k2d:SX (3.2) BS01 rna N/A GO:0000462 ... P0CX29 38942792
    99 8k2d:SY (3.2) BS01 rna N/A GO:0000462 ... P0CX31 38942792
    100 8k2d:SZ (3.2) BS01 rna N/A GO:0002181 ... Q3E792 38942792
    101 8k2d:Sa (3.2) BS01 rna N/A GO:0000054 ... P39939 38942792
    102 8k2d:Sa (3.2) BS02 ZN N/A GO:0000054 ... P39939 38942792
    103 8k2d:Sb (3.2) BS01 rna N/A GO:0000028 ... P35997 38942792
    104 8k2d:Sc (3.2) BS01 rna N/A GO:0000028 ... Q3E7X9 38942792
    105 8k2d:Sd (3.2) BS01 rna N/A GO:0002181 ... P41057 38942792
    106 8k2d:Se (3.2) BS01 rna N/A GO:0002181 ... P0CX33 38942792
    107 8k2d:Sf (3.2) BS01 rna N/A GO:0000028 ... P05759 38942792
    108 8k2d:Sg (3.2) BS01 rna N/A GO:0001965 ... P38011 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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