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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8hkv:AL2P (4.94) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    2 8hkv:AL3P (4.94) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    3 8hkv:AL4P (4.94) BS01 rna ? GO:0003723 ... Q4JB41 37604686
    4 8hkv:AL5P (4.94) BS01 rna ? GO:0000049 ... P41202 37604686
    5 8hkv:AL5P (4.94) BS02 rna ? GO:0000049 ... P41202 37604686
    6 8hkv:AL6P (4.94) BS01 rna ? GO:0002181 ... O05637 37604686
    7 8hkv:ALX0 (4.94) BS01 rna ? GO:0003735 ... P38613 37604686
    8 8hkv:ALX0 (4.94) BS02 rna ? GO:0003735 ... P38613 37604686
    9 8hkv:L10E (4.94) BS01 rna ? GO:0000027 ... Q4JC84 37604686
    10 8hkv:L10E (4.94) BS02 rna ? GO:0000027 ... Q4JC84 37604686
    11 8hkv:L13P (4.94) BS01 rna ? GO:0003729 ... P39473 37604686
    12 8hkv:L141 (4.94) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    13 8hkv:L142 (4.94) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    14 8hkv:L14P (4.94) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    15 8hkv:L15E (4.94) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    16 8hkv:L15P (4.94) BS01 rna ? GO:0003735 ... O05643 37604686
    17 8hkv:L18E (4.94) BS01 rna ? GO:0003735 ... P39474 37604686
    18 8hkv:L18P (4.94) BS01 rna ? GO:0000027 ... O05640 37604686
    19 8hkv:L18P (4.94) BS02 rna ? GO:0000027 ... O05640 37604686
    20 8hkv:L19E (4.94) BS01 rna ? GO:0003723 ... O05639 37604686
    21 8hkv:L21E (4.94) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    22 8hkv:L21E (4.94) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    23 8hkv:L22P (4.94) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    24 8hkv:L23P (4.94) BS01 rna ? GO:0000027 ... Q4JB42 37604686
    25 8hkv:L24E (4.94) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    26 8hkv:L24P (4.94) BS01 rna ? GO:0002181 ... O05633 37604686
    27 8hkv:L29P (4.94) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    28 8hkv:L30E (4.94) BS01 rna ? GO:0003723 ... P11522 37604686
    29 8hkv:L30P (4.94) BS01 rna ? GO:0000463 ... O05642 37604686
    30 8hkv:L31E (4.94) BS01 rna ? GO:0003735 ... P38618 37604686
    31 8hkv:L32E (4.94) BS01 rna ? GO:0003735 ... O05638 37604686
    32 8hkv:L34E (4.94) BS01 rna ? GO:0003735 ... O05981 37604686
    33 8hkv:L37A (4.94) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    34 8hkv:L37E (4.94) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    35 8hkv:L39E (4.94) BS01 rna ? GO:0003735 ... P13005 37604686
    36 8hkv:L40E (4.94) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    37 8hkv:L44E (4.94) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    38 8hkv:L45A (4.94) BS01 rna ? N/A Q4J9G6 37604686
    39 8hkv:L46A (4.94) BS01 rna ? N/A Q4J953 37604686
    40 8hkv:L47A (4.94) BS01 rna ? N/A F2Z6C4 37604686
    41 8hkv:L7A1 (4.94) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    42 8hkv:L7A2 (4.94) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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