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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g6w:0 (2.02) BS01 rna ? GO:0000027 ... P0A7N9 37396857
    2 8g6w:1 (2.02) BS01 rna ? GO:0002181 ... P0A7P5 37396857
    3 8g6w:2 (2.02) BS01 rna ? GO:0002181 ... P0A7Q1 37396857
    4 8g6w:3 (2.02) BS01 rna ? GO:0002181 ... P0A7Q6 37396857
    5 8g6w:3 (2.02) BS02 ZN ? GO:0002181 ... P0A7Q6 37396857
    6 8g6w:4 (2.02) BS01 rna ? GO:0002181 ... P0A7M9 37396857
    7 8g6w:4 (2.02) BS02 ZN ? GO:0002181 ... P0A7M9 37396857
    8 8g6w:B (2.02) BS01 rna ? GO:0000028 ... P0A7V0 37396857
    9 8g6w:C (2.02) BS01 rna ? GO:0000028 ... P0A7V3 37396857
    10 8g6w:C (2.02) BS02 rna ? GO:0000028 ... P0A7V3 37396857
    11 8g6w:D (2.02) BS01 rna ? GO:0000028 ... P0A7V8 37396857
    12 8g6w:E (2.02) BS01 rna ? GO:0000028 ... P0A7W1 37396857
    13 8g6w:E (2.02) BS02 rna ? GO:0000028 ... P0A7W1 37396857
    14 8g6w:F (2.02) BS01 rna ? GO:0002181 ... P02358 37396857
    15 8g6w:G (2.02) BS01 rna ? GO:0000028 ... P02359 37396857
    16 8g6w:G (2.02) BS02 rna ? GO:0000028 ... P02359 37396857
    17 8g6w:H (2.02) BS01 rna ? GO:0000028 ... P0A7W7 37396857
    18 8g6w:I (2.02) BS01 rna ? GO:0000049 ... P0A7X3 37396857
    19 8g6w:J (2.02) BS01 rna ? GO:0000049 ... P0A7R5 37396857
    20 8g6w:K (2.02) BS01 rna ? GO:0002181 ... P0A7R9 37396857
    21 8g6w:L (2.02) BS01 rna ? GO:0000049 ... P0A7S3 37396857
    22 8g6w:M (2.02) BS01 rna ? GO:0000049 ... P0A7S9 37396857
    23 8g6w:M (2.02) BS02 rna ? GO:0000049 ... P0A7S9 37396857
    24 8g6w:N (2.02) BS01 rna ? GO:0000028 ... P0AG59 37396857
    25 8g6w:O (2.02) BS01 rna ? GO:0000028 ... P0ADZ4 37396857
    26 8g6w:O (2.02) BS02 rna ? GO:0000028 ... P0ADZ4 37396857
    27 8g6w:P (2.02) BS01 rna ? GO:0000028 ... P0A7T3 37396857
    28 8g6w:Q (2.02) BS01 rna ? GO:0000028 ... P0AG63 37396857
    29 8g6w:R (2.02) BS01 rna ? GO:0002181 ... P0A7T7 37396857
    30 8g6w:S (2.02) BS01 rna ? GO:0000028 ... P0A7U3 37396857
    31 8g6w:T (2.02) BS01 rna ? GO:0000028 ... P0A7U7 37396857
    32 8g6w:U (2.02) BS01 rna ? GO:0000028 ... P68679 37396857
    33 8g6w:c (2.02) BS01 rna ? GO:0000027 ... P60422 37396857
    34 8g6w:d (2.02) BS01 rna ? GO:0000027 ... P60438 37396857
    35 8g6w:e (2.02) BS01 rna ? GO:0001070 ... P60723 37396857
    36 8g6w:f (2.02) BS01 rna ? GO:0000027 ... P62399 37396857
    37 8g6w:f (2.02) BS02 rna ? GO:0000027 ... P62399 37396857
    38 8g6w:f (2.02) BS03 rna ? GO:0000027 ... P62399 37396857
    39 8g6w:g (2.02) BS01 rna ? GO:0000027 ... P0AG55 37396857
    40 8g6w:h (2.02) BS01 rna ? GO:0002181 ... P0A7R1 37396857
    41 8g6w:i (2.02) BS01 rna ? GO:0002181 ... P0AA10 37396857
    42 8g6w:j (2.02) BS01 rna ? GO:0002181 ... P0ADY3 37396857
    43 8g6w:j (2.02) BS02 rna ? GO:0002181 ... P0ADY3 37396857
    44 8g6w:k (2.02) BS01 rna ? GO:0002181 ... P02413 37396857
    45 8g6w:l (2.02) BS01 rna ? GO:0000027 ... P0ADY7 37396857
    46 8g6w:l (2.02) BS02 rna ? GO:0000027 ... P0ADY7 37396857
    47 8g6w:m (2.02) BS01 rna ? GO:0000027 ... P0AG44 37396857
    48 8g6w:m (2.02) BS02 MG ? GO:0000027 ... P0AG44 37396857
    49 8g6w:n (2.02) BS01 rna ? GO:0002181 ... P0C018 37396857
    50 8g6w:n (2.02) BS02 rna ? GO:0002181 ... P0C018 37396857
    51 8g6w:o (2.02) BS01 rna ? GO:0000027 ... P0A7K6 37396857
    52 8g6w:o (2.02) BS02 rna ? GO:0000027 ... P0A7K6 37396857
    53 8g6w:p (2.02) BS01 rna ? GO:0000027 ... P0A7L3 37396857
    54 8g6w:q (2.02) BS01 rna ? GO:0002181 ... P0AG48 37396857
    55 8g6w:r (2.02) BS01 rna ? GO:0002181 ... P61175 37396857
    56 8g6w:s (2.02) BS01 rna ? GO:0000027 ... P0ADZ0 37396857
    57 8g6w:t (2.02) BS01 rna ? GO:0000027 ... P60624 37396857
    58 8g6w:u (2.02) BS01 rna ? GO:0000027 ... P68919 37396857
    59 8g6w:v (2.02) BS01 rna ? GO:0000027 ... P0A7L8 37396857
    60 8g6w:v (2.02) BS02 rna ? GO:0000027 ... P0A7L8 37396857
    61 8g6w:w (2.02) BS01 rna ? GO:0000027 ... P0A7M2 37396857
    62 8g6w:x (2.02) BS01 rna ? GO:0000027 ... P0A7M6 37396857
    63 8g6w:y (2.02) BS01 rna ? GO:0000027 ... P0AG51 37396857
    64 8g6w:y (2.02) BS02 rna ? GO:0000027 ... P0AG51 37396857
    65 8g6w:z (2.02) BS01 rna ? GO:0000027 ... P0A7N4 37396857
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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