Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 264 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g2d:10 (2.7) BS01 rna ? GO:0003735 ... P60493 38238495
    2 8g2d:10 (2.7) BS02 rna ? GO:0003735 ... P60493 38238495
    3 8g2d:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38238495
    4 8g2d:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38238495
    5 8g2d:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38238495
    6 8g2d:11 (2.7) BS01 rna ? GO:0003735 ... P60494 38238495
    7 8g2d:11 (2.7) BS02 rna ? GO:0003735 ... P60494 38238495
    8 8g2d:11 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    9 8g2d:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38238495
    10 8g2d:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    11 8g2d:12 (2.7) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    12 8g2d:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38238495
    13 8g2d:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38238495
    14 8g2d:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    15 8g2d:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    16 8g2d:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38238495
    17 8g2d:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    18 8g2d:15 (2.7) BS01 rna ? GO:0003735 ... P80339 38238495
    19 8g2d:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    20 8g2d:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38238495
    21 8g2d:16 (2.7) BS01 rna ? GO:0000049 ... P35871 38238495
    22 8g2d:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    23 8g2d:16 (2.7) BS03 MG ? GO:0000049 ... P35871 38238495
    24 8g2d:16 (2.7) BS04 ZN ? GO:0000049 ... P35871 38238495
    25 8g2d:17 (2.7) BS01 rna ? GO:0003735 ... P80340 38238495
    26 8g2d:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38238495
    27 8g2d:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38238495
    28 8g2d:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38238495
    29 8g2d:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    30 8g2d:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38238495
    31 8g2d:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    32 8g2d:1D (2.7) BS01 rna ? GO:0002181 ... P60405 38238495
    33 8g2d:1D (2.7) BS02 rna ? GO:0002181 ... P60405 38238495
    34 8g2d:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    35 8g2d:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    36 8g2d:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    37 8g2d:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    38 8g2d:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38238495
    39 8g2d:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38238495
    40 8g2d:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38238495
    41 8g2d:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38238495
    42 8g2d:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38238495
    43 8g2d:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38238495
    44 8g2d:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38238495
    45 8g2d:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    46 8g2d:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    47 8g2d:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    48 8g2d:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    49 8g2d:1E (2.7) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    50 8g2d:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38238495
    51 8g2d:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    52 8g2d:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    53 8g2d:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    54 8g2d:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    55 8g2d:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    56 8g2d:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    57 8g2d:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    58 8g2d:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    59 8g2d:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38238495
    60 8g2d:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38238495
    61 8g2d:1G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38238495
    62 8g2d:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    63 8g2d:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 38238495
    64 8g2d:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38238495
    65 8g2d:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38238495
    66 8g2d:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    67 8g2d:1N (2.7) BS01 rna ? GO:0003729 ... P60488 38238495
    68 8g2d:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38238495
    69 8g2d:1N (2.7) BS03 MG ? GO:0003729 ... P60488 38238495
    70 8g2d:1N (2.7) BS04 MG ? GO:0003729 ... P60488 38238495
    71 8g2d:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38238495
    72 8g2d:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38238495
    73 8g2d:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    74 8g2d:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38238495
    75 8g2d:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38238495
    76 8g2d:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    77 8g2d:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    78 8g2d:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    79 8g2d:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    80 8g2d:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    81 8g2d:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 38238495
    82 8g2d:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 38238495
    83 8g2d:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 38238495
    84 8g2d:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    85 8g2d:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    86 8g2d:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38238495
    87 8g2d:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38238495
    88 8g2d:1Q (2.7) BS08 MG ? GO:0000049 ... P60489 38238495
    89 8g2d:1Q (2.7) BS09 MG ? GO:0000049 ... P60489 38238495
    90 8g2d:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38238495
    91 8g2d:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    92 8g2d:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    93 8g2d:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 38238495
    94 8g2d:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38238495
    95 8g2d:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38238495
    96 8g2d:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    97 8g2d:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    98 8g2d:1T (2.7) BS01 rna ? GO:0003735 ... P60490 38238495
    99 8g2d:1T (2.7) BS02 rna ? GO:0003735 ... P60490 38238495
    100 8g2d:1U (2.7) BS01 rna ? GO:0000027 ... P60491 38238495
    101 8g2d:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    102 8g2d:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38238495
    103 8g2d:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38238495
    104 8g2d:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38238495
    105 8g2d:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38238495
    106 8g2d:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38238495
    107 8g2d:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38238495
    108 8g2d:1V (2.7) BS01 rna ? GO:0003723 ... P60492 38238495
    109 8g2d:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    110 8g2d:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    111 8g2d:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    112 8g2d:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38238495
    113 8g2d:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38238495
    114 8g2d:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    115 8g2d:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    116 8g2d:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    117 8g2d:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    118 8g2d:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 38238495
    119 8g2d:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38238495
    120 8g2d:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    121 8g2d:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    122 8g2d:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    123 8g2d:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    124 8g2d:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38238495
    125 8g2d:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38238495
    126 8g2d:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    127 8g2d:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38238495
    128 8g2d:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38238495
    129 8g2d:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38238495
    130 8g2d:1Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 38238495
    131 8g2d:1b (2.7) BS01 rna ? GO:0003735 ... P80371 38238495
    132 8g2d:1b (2.7) BS02 MG ? GO:0003735 ... P80371 38238495
    133 8g2d:1c (2.7) BS01 rna ? GO:0003676 ... P80372 38238495
    134 8g2d:1d (2.7) BS01 rna ? GO:0003723 ... P80373 38238495
    135 8g2d:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 38238495
    136 8g2d:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38238495
    137 8g2d:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    138 8g2d:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    139 8g2d:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38238495
    140 8g2d:1g (2.7) BS01 rna ? GO:0000028 ... P17291 38238495
    141 8g2d:1g (2.7) BS02 rna ? GO:0000028 ... P17291 38238495
    142 8g2d:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38238495
    143 8g2d:1i (2.7) BS01 rna ? GO:0000049 ... P80374 38238495
    144 8g2d:1i (2.7) BS02 rna ? GO:0000049 ... P80374 38238495
    145 8g2d:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38238495
    146 8g2d:1k (2.7) BS01 rna ? GO:0003735 ... P80376 38238495
    147 8g2d:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    148 8g2d:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38238495
    149 8g2d:1l (2.7) BS02 rna ? GO:0000049 ... Q5SHN3 38238495
    150 8g2d:1m (2.7) BS01 rna ? GO:0000049 ... P80377 38238495
    151 8g2d:1m (2.7) BS02 rna ? GO:0000049 ... P80377 38238495
    152 8g2d:1m (2.7) BS03 rna ? GO:0000049 ... P80377 38238495
    153 8g2d:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38238495
    154 8g2d:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38238495
    155 8g2d:1n (2.7) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    156 8g2d:1n (2.7) BS03 ZN ? GO:0003735 ... P0DOY6 38238495
    157 8g2d:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38238495
    158 8g2d:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38238495
    159 8g2d:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38238495
    160 8g2d:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38238495
    161 8g2d:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38238495
    162 8g2d:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38238495
    163 8g2d:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38238495
    164 8g2d:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38238495
    165 8g2d:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38238495
    166 8g2d:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38238495
    167 8g2d:21 (2.7) BS02 rna ? GO:0003735 ... P60494 38238495
    168 8g2d:21 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    169 8g2d:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38238495
    170 8g2d:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38238495
    171 8g2d:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38238495
    172 8g2d:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    173 8g2d:23 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    174 8g2d:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38238495
    175 8g2d:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    176 8g2d:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38238495
    177 8g2d:25 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    178 8g2d:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 38238495
    179 8g2d:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38238495
    180 8g2d:26 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    181 8g2d:26 (2.7) BS03 ZN ? GO:0000049 ... P35871 38238495
    182 8g2d:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38238495
    183 8g2d:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38238495
    184 8g2d:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38238495
    185 8g2d:29 (2.7) BS02 MG ? GO:0003735 ... Q5SHR2 38238495
    186 8g2d:29 (2.7) BS03 ZN ? GO:0003735 ... Q5SHR2 38238495
    187 8g2d:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38238495
    188 8g2d:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38238495
    189 8g2d:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    190 8g2d:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    191 8g2d:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    192 8g2d:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    193 8g2d:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38238495
    194 8g2d:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    195 8g2d:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38238495
    196 8g2d:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    197 8g2d:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    198 8g2d:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    199 8g2d:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38238495
    200 8g2d:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38238495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218