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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fru:A (2.49) BS01 rna ? GO:0002181 ... E2RTN4 38242118
    2 8fru:B (2.49) BS01 rna ? GO:0003723 ... V6TF11 38242118
    3 8fru:C (2.49) BS01 rna ? GO:0003723 ... A8B7H8 38242118
    4 8fru:C (2.49) BS02 rna ? GO:0003723 ... A8B7H8 38242118
    5 8fru:D (2.49) BS01 rna ? GO:0000027 ... E2RU47 38242118
    6 8fru:D (2.49) BS02 rna ? GO:0000027 ... E2RU47 38242118
    7 8fru:F (2.49) BS01 rna ? GO:0000463 ... A8BRY6 38242118
    8 8fru:F (2.49) BS02 rna ? GO:0000463 ... A8BRY6 38242118
    9 8fru:G (2.49) BS01 rna ? GO:0000470 ... A8BLL7 38242118
    10 8fru:G (2.49) BS02 rna ? GO:0000470 ... A8BLL7 38242118
    11 8fru:H (2.49) BS01 rna ? GO:0002181 ... A8BNT5 38242118
    12 8fru:I (2.49) BS01 rna ? GO:0000027 ... A8BM86 38242118
    13 8fru:I (2.49) BS02 rna ? GO:0000027 ... A8BM86 38242118
    14 8fru:J (2.49) BS01 rna ? GO:0003723 ... A8BI95 38242118
    15 8fru:J (2.49) BS02 rna ? GO:0003723 ... A8BI95 38242118
    16 8fru:L (2.49) BS01 rna ? GO:0003735 ... A8B6M8 38242118
    17 8fru:L (2.49) BS02 rna ? GO:0003735 ... A8B6M8 38242118
    18 8fru:M (2.49) BS01 rna ? GO:0003723 ... A8B4F8 38242118
    19 8fru:N (2.49) BS01 rna ? GO:0002181 ... A8B8Z6 38242118
    20 8fru:N (2.49) BS02 rna ? GO:0002181 ... A8B8Z6 38242118
    21 8fru:O (2.49) BS01 rna ? GO:0003729 ... A8BU75 38242118
    22 8fru:P (2.49) BS01 rna ? GO:0002181 ... A8BE76 38242118
    23 8fru:P (2.49) BS02 rna ? GO:0002181 ... A8BE76 38242118
    24 8fru:Q (2.49) BS01 rna ? GO:0003723 ... A8B4T7 38242118
    25 8fru:R (2.49) BS01 rna ? GO:0003723 ... A8BH61 38242118
    26 8fru:S (2.49) BS01 rna ? GO:0003735 ... V6TB90 38242118
    27 8fru:S (2.49) BS02 rna ? GO:0003735 ... V6TB90 38242118
    28 8fru:T (2.49) BS01 rna ? GO:0003735 ... A8B2Q4 38242118
    29 8fru:T (2.49) BS02 rna ? GO:0003735 ... A8B2Q4 38242118
    30 8fru:U (2.49) BS01 rna ? GO:0003735 ... A8BW84 38242118
    31 8fru:V (2.49) BS01 rna ? GO:0003735 ... A8BS37 38242118
    32 8fru:W (2.49) BS01 rna ? GO:0005730 ... A8BRH7 38242118
    33 8fru:X (2.49) BS01 rna ? GO:0000027 ... A8BMP6 38242118
    34 8fru:X (2.49) BS02 rna ? GO:0000027 ... A8BMP6 38242118
    35 8fru:Y (2.49) BS01 rna ? GO:0003723 ... V6TD19 38242118
    36 8fru:Y (2.49) BS02 rna ? GO:0003723 ... V6TD19 38242118
    37 8fru:Z (2.49) BS01 rna ? GO:0003735 ... A8B1T3 38242118
    38 8fru:a (2.49) BS01 rna ? GO:0003735 ... A8BZ78 38242118
    39 8fru:b (2.49) BS01 rna ? GO:0003735 ... V6TAA6 38242118
    40 8fru:c (2.49) BS01 rna ? GO:0003723 ... A8B5N7 38242118
    41 8fru:d (2.49) BS01 rna ? GO:0002181 ... A8BMP3 38242118
    42 8fru:e (2.49) BS01 rna ? GO:0003735 ... A8BMD9 38242118
    43 8fru:f (2.49) BS01 rna ? GO:0002181 ... A8BKK5 38242118
    44 8fru:g (2.49) BS01 rna ? GO:0003735 ... A8BMF7 38242118
    45 8fru:h (2.49) BS01 rna ? GO:0000463 ... A0A132NRN1 38242118
    46 8fru:h (2.49) BS02 rna ? GO:0000463 ... A0A132NRN1 38242118
    47 8fru:i (2.49) BS01 rna ? GO:0002181 ... A8BYA6 38242118
    48 8fru:j (2.49) BS01 rna ? GO:0003723 ... V6TG99 38242118
    49 8fru:j (2.49) BS02 rna ? GO:0003723 ... V6TG99 38242118
    50 8fru:j (2.49) BS03 ZN ? GO:0003723 ... V6TG99 38242118
    51 8fru:k (2.49) BS01 rna ? GO:0003735 ... A8B481 38242118
    52 8fru:l (2.49) BS01 rna N/A GO:0003735 ... N/A 38242118
    53 8fru:l (2.49) BS02 rna N/A GO:0003735 ... N/A 38242118
    54 8fru:m (2.49) BS01 rna ? GO:0003735 ... A8BXE1 38242118
    55 8fru:m (2.49) BS02 ZN ? GO:0003735 ... A8BXE1 38242118
    56 8fru:o (2.49) BS01 rna ? GO:0003735 ... A8BQU8 38242118
    57 8fru:p (2.49) BS01 rna ? GO:0003735 ... A8BN26 38242118
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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