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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 230 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fc2:10 (2.5) BS01 rna ? GO:0003735 ... P60493 37452045
    2 8fc2:10 (2.5) BS02 rna ? GO:0003735 ... P60493 37452045
    3 8fc2:10 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    4 8fc2:10 (2.5) BS04 MG ? GO:0003735 ... P60493 37452045
    5 8fc2:11 (2.5) BS01 rna ? GO:0003735 ... P60494 37452045
    6 8fc2:11 (2.5) BS02 MG ? GO:0003735 ... P60494 37452045
    7 8fc2:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 37452045
    8 8fc2:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 37452045
    9 8fc2:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 37452045
    10 8fc2:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    11 8fc2:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    12 8fc2:14 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 37452045
    13 8fc2:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    14 8fc2:15 (2.5) BS01 rna ? GO:0003735 ... P80339 37452045
    15 8fc2:15 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    16 8fc2:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    17 8fc2:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 37452045
    18 8fc2:16 (2.5) BS01 rna ? GO:0000049 ... P35871 37452045
    19 8fc2:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    20 8fc2:17 (2.5) BS01 rna ? GO:0003735 ... P80340 37452045
    21 8fc2:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    22 8fc2:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    23 8fc2:17 (2.5) BS04 MG ? GO:0003735 ... P80340 37452045
    24 8fc2:18 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 37452045
    25 8fc2:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    26 8fc2:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    27 8fc2:19 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 37452045
    28 8fc2:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    29 8fc2:1D (2.5) BS01 rna ? GO:0002181 ... P60405 37452045
    30 8fc2:1D (2.5) BS02 rna ? GO:0002181 ... P60405 37452045
    31 8fc2:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    32 8fc2:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    33 8fc2:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    34 8fc2:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    35 8fc2:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    36 8fc2:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    37 8fc2:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    38 8fc2:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    39 8fc2:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    40 8fc2:1D (2.5) BS12 MG ? GO:0002181 ... P60405 37452045
    41 8fc2:1E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 37452045
    42 8fc2:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    43 8fc2:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    44 8fc2:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    45 8fc2:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    46 8fc2:1F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 37452045
    47 8fc2:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    48 8fc2:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    49 8fc2:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    50 8fc2:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    51 8fc2:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    52 8fc2:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    53 8fc2:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    54 8fc2:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    55 8fc2:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    56 8fc2:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    57 8fc2:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    58 8fc2:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    59 8fc2:1F (2.5) BS14 ARG ? GO:0003735 ... Q5SHN9 37452045
    60 8fc2:1G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 37452045
    61 8fc2:1G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 37452045
    62 8fc2:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    63 8fc2:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    64 8fc2:1H (2.5) BS01 rna ? GO:0002181 ... P0DOY8 37452045
    65 8fc2:1I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 37452045
    66 8fc2:1N (2.5) BS01 rna ? GO:0003729 ... P60488 37452045
    67 8fc2:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    68 8fc2:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    69 8fc2:1O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 37452045
    70 8fc2:1O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 37452045
    71 8fc2:1P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 37452045
    72 8fc2:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    73 8fc2:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    74 8fc2:1Q (2.5) BS01 rna ? GO:0000049 ... P60489 37452045
    75 8fc2:1Q (2.5) BS02 rna ? GO:0000049 ... P60489 37452045
    76 8fc2:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    77 8fc2:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    78 8fc2:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    79 8fc2:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    80 8fc2:1R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 37452045
    81 8fc2:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    82 8fc2:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    83 8fc2:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    84 8fc2:1S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 37452045
    85 8fc2:1S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 37452045
    86 8fc2:1T (2.5) BS01 rna ? GO:0003735 ... P60490 37452045
    87 8fc2:1T (2.5) BS02 rna ? GO:0003735 ... P60490 37452045
    88 8fc2:1U (2.5) BS01 rna ? GO:0000027 ... P60491 37452045
    89 8fc2:1U (2.5) BS02 MG ? GO:0000027 ... P60491 37452045
    90 8fc2:1U (2.5) BS03 MG ? GO:0000027 ... P60491 37452045
    91 8fc2:1U (2.5) BS04 MG ? GO:0000027 ... P60491 37452045
    92 8fc2:1U (2.5) BS05 MG ? GO:0000027 ... P60491 37452045
    93 8fc2:1U (2.5) BS06 MG ? GO:0000027 ... P60491 37452045
    94 8fc2:1U (2.5) BS07 MG ? GO:0000027 ... P60491 37452045
    95 8fc2:1V (2.5) BS01 rna ? GO:0003723 ... P60492 37452045
    96 8fc2:1V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    97 8fc2:1V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    98 8fc2:1V (2.5) BS04 MG ? GO:0003723 ... P60492 37452045
    99 8fc2:1W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 37452045
    100 8fc2:1X (2.5) BS01 rna ? GO:0000027 ... Q5SHP0 37452045
    101 8fc2:1Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 37452045
    102 8fc2:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    103 8fc2:1Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 37452045
    104 8fc2:1Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 37452045
    105 8fc2:1b (2.5) BS01 rna ? GO:0003735 ... P80371 37452045
    106 8fc2:1b (2.5) BS02 MG ? GO:0003735 ... P80371 37452045
    107 8fc2:1c (2.5) BS01 rna ? GO:0003676 ... P80372 37452045
    108 8fc2:1d (2.5) BS01 rna ? GO:0003723 ... P80373 37452045
    109 8fc2:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 37452045
    110 8fc2:1e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 37452045
    111 8fc2:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    112 8fc2:1f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 37452045
    113 8fc2:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    114 8fc2:1g (2.5) BS01 rna ? GO:0000028 ... P17291 37452045
    115 8fc2:1h (2.5) BS01 rna ? GO:0003735 ... P0DOY9 37452045
    116 8fc2:1i (2.5) BS01 rna ? GO:0000049 ... P80374 37452045
    117 8fc2:1j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 37452045
    118 8fc2:1k (2.5) BS01 rna ? GO:0003735 ... P80376 37452045
    119 8fc2:1k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    120 8fc2:1l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 37452045
    121 8fc2:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    122 8fc2:1m (2.5) BS01 rna ? GO:0000049 ... P80377 37452045
    123 8fc2:1m (2.5) BS02 rna ? GO:0000049 ... P80377 37452045
    124 8fc2:1m (2.5) BS03 MG ? GO:0000049 ... P80377 37452045
    125 8fc2:1n (2.5) BS01 rna ? GO:0003735 ... P0DOY6 37452045
    126 8fc2:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    127 8fc2:1o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 37452045
    128 8fc2:1o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 37452045
    129 8fc2:1p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 37452045
    130 8fc2:1q (2.5) BS01 rna ? GO:0003735 ... P0DOY7 37452045
    131 8fc2:1r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 37452045
    132 8fc2:1s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 37452045
    133 8fc2:1t (2.5) BS01 rna ? GO:0003723 ... P80380 37452045
    134 8fc2:1t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    135 8fc2:1y (2.5) BS01 rna ? GO:0005515 ... P0AD49 37452045
    136 8fc2:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 37452045
    137 8fc2:1y (2.5) BS03 MG ? GO:0005515 ... P0AD49 37452045
    138 8fc2:20 (2.5) BS01 rna ? GO:0003735 ... P60493 37452045
    139 8fc2:20 (2.5) BS02 rna ? GO:0003735 ... P60493 37452045
    140 8fc2:20 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    141 8fc2:21 (2.5) BS01 rna ? GO:0003735 ... P60494 37452045
    142 8fc2:22 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 37452045
    143 8fc2:23 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 37452045
    144 8fc2:23 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 37452045
    145 8fc2:24 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 37452045
    146 8fc2:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    147 8fc2:25 (2.5) BS01 rna ? GO:0003735 ... P80339 37452045
    148 8fc2:25 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    149 8fc2:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 37452045
    150 8fc2:26 (2.5) BS01 rna ? GO:0000049 ... P35871 37452045
    151 8fc2:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    152 8fc2:27 (2.5) BS01 rna ? GO:0003735 ... P80340 37452045
    153 8fc2:27 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    154 8fc2:27 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    155 8fc2:28 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 37452045
    156 8fc2:29 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 37452045
    157 8fc2:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    158 8fc2:2D (2.5) BS01 rna ? GO:0002181 ... P60405 37452045
    159 8fc2:2D (2.5) BS02 rna ? GO:0002181 ... P60405 37452045
    160 8fc2:2D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    161 8fc2:2D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    162 8fc2:2D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    163 8fc2:2D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    164 8fc2:2D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    165 8fc2:2D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    166 8fc2:2D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    167 8fc2:2D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    168 8fc2:2E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 37452045
    169 8fc2:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    170 8fc2:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    171 8fc2:2F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 37452045
    172 8fc2:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    173 8fc2:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    174 8fc2:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    175 8fc2:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    176 8fc2:2G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 37452045
    177 8fc2:2G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 37452045
    178 8fc2:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179 8fc2:2H (2.5) BS01 rna ? GO:0002181 ... P0DOY8 37452045
    180 8fc2:2I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 37452045
    181 8fc2:2N (2.5) BS01 rna ? GO:0003729 ... P60488 37452045
    182 8fc2:2O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 37452045
    183 8fc2:2O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 37452045
    184 8fc2:2P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 37452045
    185 8fc2:2Q (2.5) BS01 rna ? GO:0000049 ... P60489 37452045
    186 8fc2:2Q (2.5) BS02 rna ? GO:0000049 ... P60489 37452045
    187 8fc2:2R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 37452045
    188 8fc2:2R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    189 8fc2:2S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 37452045
    190 8fc2:2S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 37452045
    191 8fc2:2T (2.5) BS01 rna ? GO:0003735 ... P60490 37452045
    192 8fc2:2T (2.5) BS02 rna ? GO:0003735 ... P60490 37452045
    193 8fc2:2U (2.5) BS01 rna ? GO:0000027 ... P60491 37452045
    194 8fc2:2V (2.5) BS01 rna ? GO:0003723 ... P60492 37452045
    195 8fc2:2V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    196 8fc2:2V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    197 8fc2:2W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 37452045
    198 8fc2:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    199 8fc2:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    200 8fc2:2X (2.5) BS01 rna ? GO:0000027 ... Q5SHP0 37452045
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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