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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bpo:A2 (2.8) BS01 rna N/A GO:0003723 ... N/A 37295431
    2 8bpo:B2 (2.8) BS01 rna ? GO:0003723 ... G1TL06 37295431
    3 8bpo:C2 (2.8) BS01 rna ? GO:0003723 ... A0A5F9C3C5 37295431
    4 8bpo:C2 (2.8) BS02 rna ? GO:0003723 ... A0A5F9C3C5 37295431
    5 8bpo:D2 (2.8) BS01 rna ? GO:0000027 ... P19949 37295431
    6 8bpo:D2 (2.8) BS02 rna ? GO:0000027 ... P19949 37295431
    7 8bpo:E2 (2.8) BS01 rna ? GO:0000027 ... G1SKF7 37295431
    8 8bpo:F2 (2.8) BS01 rna N/A GO:0000463 ... N/A 37295431
    9 8bpo:F2 (2.8) BS02 rna N/A GO:0000463 ... N/A 37295431
    10 8bpo:G2 (2.8) BS01 rna ? GO:0000470 ... G1STW0 37295431
    11 8bpo:G2 (2.8) BS02 rna ? GO:0000470 ... G1STW0 37295431
    12 8bpo:H2 (2.8) BS01 rna ? GO:0002181 ... G1SWI6 37295431
    13 8bpo:I2 (2.8) BS01 rna ? GO:0000027 ... B7NZQ2 37295431
    14 8bpo:I2 (2.8) BS02 rna ? GO:0000027 ... B7NZQ2 37295431
    15 8bpo:J2 (2.8) BS01 rna ? GO:0003723 ... G1TUB8 37295431
    16 8bpo:J2 (2.8) BS02 rna ? GO:0003723 ... G1TUB8 37295431
    17 8bpo:K2 (2.8) BS01 rna ? GO:0003723 ... G1TKB3 37295431
    18 8bpo:K2 (2.8) BS02 rna ? GO:0003723 ... G1TKB3 37295431
    19 8bpo:L2 (2.8) BS01 rna ? GO:0003723 ... G1SZ12 37295431
    20 8bpo:M2 (2.8) BS01 rna ? GO:0002181 ... G1T0C1 37295431
    21 8bpo:M2 (2.8) BS02 rna ? GO:0002181 ... G1T0C1 37295431
    22 8bpo:N2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    23 8bpo:O2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    24 8bpo:O2 (2.8) BS02 rna N/A GO:0003735 ... N/A 37295431
    25 8bpo:P2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    26 8bpo:Q2 (2.8) BS01 rna N/A GO:0003723 ... N/A 37295431
    27 8bpo:R2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    28 8bpo:R2 (2.8) BS02 rna N/A GO:0003735 ... N/A 37295431
    29 8bpo:S2 (2.8) BS01 rna ? GO:0003735 ... G1SHQ2 37295431
    30 8bpo:S2 (2.8) BS02 rna ? GO:0003735 ... G1SHQ2 37295431
    31 8bpo:T2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    32 8bpo:T2 (2.8) BS02 peptide N/A GO:0003735 ... N/A 37295431
    33 8bpo:U2 (2.8) BS01 rna ? GO:0000122 ... G1T6D1 37295431
    34 8bpo:V2 (2.8) BS01 rna ? GO:0000027 ... G1SE28 37295431
    35 8bpo:W2 (2.8) BS01 rna ? GO:0000027 ... G1SE76 37295431
    36 8bpo:W2 (2.8) BS02 rna ? GO:0000027 ... G1SE76 37295431
    37 8bpo:X2 (2.8) BS01 rna ? GO:0002181 ... G1SQH0 37295431
    38 8bpo:X2 (2.8) BS02 rna ? GO:0002181 ... G1SQH0 37295431
    39 8bpo:Y2 (2.8) BS01 rna ? GO:0003735 ... G1TXF6 37295431
    40 8bpo:Z2 (2.8) BS01 rna ? GO:0003735 ... G1SNY0 37295431
    41 8bpo:a2 (2.8) BS01 rna ? GO:0002181 ... G1SGR6 37295431
    42 8bpo:b2 (2.8) BS01 rna ? GO:0002181 ... G1TDL2 37295431
    43 8bpo:c2 (2.8) BS01 rna ? GO:0002181 ... G1SHG0 37295431
    44 8bpo:d2 (2.8) BS01 rna ? GO:0003735 ... G1TUN8 37295431
    45 8bpo:e2 (2.8) BS01 rna ? GO:0000049 ... G1SF08 37295431
    46 8bpo:f2 (2.8) BS01 rna ? GO:0003735 ... G1TXG5 37295431
    47 8bpo:f2 (2.8) BS02 ZN ? GO:0003735 ... G1TXG5 37295431
    48 8bpo:g2 (2.8) BS01 rna ? GO:0000463 ... G1SIT5 37295431
    49 8bpo:g2 (2.8) BS02 rna ? GO:0000463 ... G1SIT5 37295431
    50 8bpo:h2 (2.8) BS01 rna ? GO:0002181 ... G1TTQ5 37295431
    51 8bpo:i2 (2.8) BS01 rna ? GO:0003723 ... U3KPD5 37295431
    52 8bpo:i2 (2.8) BS02 rna ? GO:0003723 ... U3KPD5 37295431
    53 8bpo:i2 (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 37295431
    54 8bpo:j2 (2.8) BS01 rna ? GO:0003735 ... G1U001 37295431
    55 8bpo:k2 (2.8) BS01 rna ? GO:0003735 ... G1TTN1 37295431
    56 8bpo:k2 (2.8) BS02 rna ? GO:0003735 ... G1TTN1 37295431
    57 8bpo:l2 (2.8) BS01 rna N/A GO:0003735 ... N/A 37295431
    58 8bpo:l2 (2.8) BS02 ZN N/A GO:0003735 ... N/A 37295431
    59 8bpo:n2 (2.8) BS01 rna ? GO:0003735 ... G1T040 37295431
    60 8bpo:n2 (2.8) BS02 ZN ? GO:0003735 ... G1T040 37295431
    61 8bpo:o2 (2.8) BS01 rna ? GO:0003735 ... G1SY53 37295431
    62 8bpo:o2 (2.8) BS02 ZN ? GO:0003735 ... G1SY53 37295431
    63 8bpo:p2 (2.8) BS01 rna ? GO:0003735 ... G1U7L1 37295431
    64 8bpo:q2 (2.8) BS01 rna ? GO:0000027 ... G1SPK4 37295431
    65 8bpo:r2 (2.8) BS01 rna ? GO:0003723 ... G1SMR7 37295431
    66 8bpo:t2 (2.8) BS01 rna ? GO:0003677 ... Q8N0Z6 37295431
    67 8bpo:t2 (2.8) BS02 peptide ? GO:0003677 ... Q8N0Z6 37295431
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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