Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bge:A (2.11) BS01 rna ? GO:0000027 ... P60422 37553384
    2 8bge:B (2.11) BS01 rna ? GO:0000027 ... P60438 37553384
    3 8bge:C (2.11) BS01 rna ? GO:0001070 ... P60723 37553384
    4 8bge:D (2.11) BS01 rna ? GO:0000027 ... P62399 37553384
    5 8bge:D (2.11) BS02 rna ? GO:0000027 ... P62399 37553384
    6 8bge:D (2.11) BS03 rna ? GO:0000027 ... P62399 37553384
    7 8bge:E (2.11) BS01 rna ? GO:0000027 ... P0AG55 37553384
    8 8bge:F (2.11) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    9 8bge:G (2.11) BS01 rna ? GO:0002181 ... P0AA10 37553384
    10 8bge:H (2.11) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    11 8bge:I (2.11) BS01 rna ? GO:0002181 ... P02413 37553384
    12 8bge:J (2.11) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    13 8bge:J (2.11) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    14 8bge:K (2.11) BS01 rna ? GO:0000027 ... P0AG44 37553384
    15 8bge:L (2.11) BS01 rna ? GO:0002181 ... P0C018 37553384
    16 8bge:L (2.11) BS02 rna ? GO:0002181 ... P0C018 37553384
    17 8bge:M (2.11) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    18 8bge:M (2.11) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    19 8bge:N (2.11) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    20 8bge:O (2.11) BS01 rna ? GO:0002181 ... P0AG48 37553384
    21 8bge:P (2.11) BS01 rna ? GO:0002181 ... P61175 37553384
    22 8bge:Q (2.11) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    23 8bge:R (2.11) BS01 rna ? GO:0000027 ... P60624 37553384
    24 8bge:S (2.11) BS01 rna ? GO:0000027 ... P68919 37553384
    25 8bge:T (2.11) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    26 8bge:U (2.11) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    27 8bge:V (2.11) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    28 8bge:W (2.11) BS01 rna ? GO:0000027 ... P0AG51 37553384
    29 8bge:a (2.11) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    30 8bge:b (2.11) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    31 8bge:c (2.11) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    32 8bge:d (2.11) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    33 8bge:e (2.11) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    34 8bge:f (2.11) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    35 8bge:g (2.11) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    36 8bge:h (2.11) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    37 8bge:i (2.11) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    38 8bge:j (2.11) BS01 rna ? GO:0002181 ... P02358 37553384
    39 8bge:k (2.11) BS01 rna ? GO:0000028 ... P02359 37553384
    40 8bge:l (2.11) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    41 8bge:m (2.11) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    42 8bge:m (2.11) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    43 8bge:n (2.11) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    44 8bge:o (2.11) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    45 8bge:p (2.11) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    46 8bge:q (2.11) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    47 8bge:r (2.11) BS01 rna ? GO:0000028 ... P0AG59 37553384
    48 8bge:s (2.11) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    49 8bge:s (2.11) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    50 8bge:t (2.11) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    51 8bge:u (2.11) BS01 rna ? GO:0000028 ... P0AG63 37553384
    52 8bge:v (2.11) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    53 8bge:w (2.11) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    54 8bge:x (2.11) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    55 8bge:y (2.11) BS01 rna ? GO:0000028 ... P68679 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218