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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8agx:0 (2.4) BS01 rna ? GO:0000027 ... P05317 36804914
    2 8agx:A (2.4) BS01 rna ? GO:0002181 ... P05748 36804914
    3 8agx:A (2.4) BS02 rna ? GO:0002181 ... P05748 36804914
    4 8agx:B (2.4) BS01 rna ? GO:0000470 ... P26784 36804914
    5 8agx:C (2.4) BS01 rna ? GO:0000448 ... P05740 36804914
    6 8agx:C (2.4) BS02 rna ? GO:0000448 ... P05740 36804914
    7 8agx:D (2.4) BS01 rna ? GO:0002181 ... P0CX49 36804914
    8 8agx:E (2.4) BS01 rna ? GO:0002181 ... P0CX82 36804914
    9 8agx:F (2.4) BS01 rna ? GO:0002181 ... P0CX23 36804914
    10 8agx:F (2.4) BS02 rna ? GO:0002181 ... P0CX23 36804914
    11 8agx:G (2.4) BS01 rna ? GO:0002181 ... Q02753 36804914
    12 8agx:G (2.4) BS02 rna ? GO:0002181 ... Q02753 36804914
    13 8agx:H (2.4) BS01 rna ? GO:0002181 ... P05749 36804914
    14 8agx:I (2.4) BS01 rna ? GO:0002181 ... P0CX41 36804914
    15 8agx:J (2.4) BS01 rna ? GO:0002181 ... P04449 36804914
    16 8agx:K (2.4) BS01 rna ? GO:0000027 ... P04456 36804914
    17 8agx:K (2.4) BS02 rna ? GO:0000027 ... P04456 36804914
    18 8agx:L (2.4) BS01 rna ? GO:0002181 ... P05743 36804914
    19 8agx:L (2.4) BS02 rna ? GO:0002181 ... P05743 36804914
    20 8agx:M (2.4) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    21 8agx:N (2.4) BS01 rna ? GO:0002181 ... P02406 36804914
    22 8agx:O (2.4) BS01 rna ? GO:0002181 ... P05747 36804914
    23 8agx:P (2.4) BS01 rna ? GO:0002181 ... P14120 36804914
    24 8agx:Q (2.4) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    25 8agx:R (2.4) BS01 rna ? GO:0002181 ... P38061 36804914
    26 8agx:R (2.4) BS02 MG ? GO:0002181 ... P38061 36804914
    27 8agx:S (2.4) BS01 rna ? GO:0000027 ... P05744 36804914
    28 8agx:T (2.4) BS01 rna ? GO:0002181 ... P87262 36804914
    29 8agx:T (2.4) BS02 ZN ? GO:0002181 ... P87262 36804914
    30 8agx:U (2.4) BS01 rna ? GO:0000463 ... P0CX84 36804914
    31 8agx:U (2.4) BS02 rna ? GO:0000463 ... P0CX84 36804914
    32 8agx:V (2.4) BS01 rna ? GO:0002181 ... P05745 36804914
    33 8agx:W (2.4) BS01 rna ? GO:0000448 ... P49166 36804914
    34 8agx:W (2.4) BS02 rna ? GO:0000448 ... P49166 36804914
    35 8agx:W (2.4) BS03 ZN ? GO:0000448 ... P49166 36804914
    36 8agx:X (2.4) BS01 rna ? GO:0002181 ... P49167 36804914
    37 8agx:Y (2.4) BS01 rna ? GO:0002181 ... P04650 36804914
    38 8agx:Y (2.4) BS02 rna ? GO:0002181 ... P04650 36804914
    39 8agx:Z (2.4) BS01 rna ? GO:0000027 ... P0CH08 36804914
    40 8agx:Z (2.4) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    41 8agx:a (2.4) BS01 rna ? GO:0000049 ... Q12532 36804914
    42 8agx:a (2.4) BS02 rna ? GO:0000049 ... Q12532 36804914
    43 8agx:a (2.4) BS03 rna ? GO:0000049 ... Q12532 36804914
    44 8agx:b (2.4) BS01 rna ? GO:0002181 ... P0CX27 36804914
    45 8agx:b (2.4) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    46 8agx:c (2.4) BS01 rna ? GO:0002181 ... P0CX25 36804914
    47 8agx:c (2.4) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    48 8agx:e (2.4) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    49 8agx:e (2.4) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    50 8agx:e (2.4) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    51 8agx:j (2.4) BS01 rna ? GO:0002181 ... P0CX45 36804914
    52 8agx:j (2.4) BS02 MG ? GO:0002181 ... P0CX45 36804914
    53 8agx:k (2.4) BS01 rna ? GO:0000027 ... P14126 36804914
    54 8agx:k (2.4) BS02 MG ? GO:0000027 ... P14126 36804914
    55 8agx:l (2.4) BS01 rna ? GO:0002181 ... P10664 36804914
    56 8agx:l (2.4) BS02 rna ? GO:0002181 ... P10664 36804914
    57 8agx:l (2.4) BS03 peptide ? GO:0002181 ... P10664 36804914
    58 8agx:m (2.4) BS01 rna ? GO:0000027 ... P26321 36804914
    59 8agx:m (2.4) BS02 rna ? GO:0000027 ... P26321 36804914
    60 8agx:n (2.4) BS01 rna ? GO:0000027 ... P05739 36804914
    61 8agx:o (2.4) BS01 rna ? GO:0000463 ... P05737 36804914
    62 8agx:o (2.4) BS02 rna ? GO:0000463 ... P05737 36804914
    63 8agx:p (2.4) BS01 rna ? GO:0000470 ... P17076 36804914
    64 8agx:p (2.4) BS02 rna ? GO:0000470 ... P17076 36804914
    65 8agx:q (2.4) BS01 rna ? GO:0002181 ... P05738 36804914
    66 8agx:r (2.4) BS01 rna ? GO:0000027 ... P41805 36804914
    67 8agx:r (2.4) BS02 rna ? GO:0000027 ... P41805 36804914
    68 8agx:r (2.4) BS03 rna ? GO:0000027 ... P41805 36804914
    69 8agx:s (2.4) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    70 8agx:s (2.4) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    71 8agx:s (2.4) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    72 8agx:t (2.4) BS01 rna ? GO:0002181 ... Q12690 36804914
    73 8agx:t (2.4) BS02 rna ? GO:0002181 ... Q12690 36804914
    74 8agx:u (2.4) BS01 rna ? GO:0000027 ... P36105 36804914
    75 8agx:v (2.4) BS01 rna ? GO:0002182 ... P23301 36804914
    76 8agx:w (2.4) BS01 rna ? GO:0000055 ... P0CX43 36804914
    77 8agx:z (2.4) BS01 rna ? GO:0000027 ... P0CX53 36804914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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