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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7v2p:B (3.3) BS01 rna ? GO:0003735 ... P80371 35316014
    2 7v2p:C (3.3) BS01 rna ? GO:0003676 ... P80372 35316014
    3 7v2p:D (3.3) BS01 rna ? GO:0003723 ... P80373 35316014
    4 7v2p:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 35316014
    5 7v2p:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 35316014
    6 7v2p:G (3.3) BS01 rna ? GO:0000028 ... P17291 35316014
    7 7v2p:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 35316014
    8 7v2p:I (3.3) BS01 rna ? GO:0000049 ... P80374 35316014
    9 7v2p:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 35316014
    10 7v2p:K (3.3) BS01 rna ? GO:0003735 ... P80376 35316014
    11 7v2p:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 35316014
    12 7v2p:M (3.3) BS01 rna ? GO:0000049 ... P80377 35316014
    13 7v2p:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 35316014
    14 7v2p:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    15 7v2p:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 35316014
    16 7v2p:P (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 35316014
    17 7v2p:Q (3.3) BS01 rna ? GO:0003735 ... P0DOY7 35316014
    18 7v2p:R (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 35316014
    19 7v2p:S (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 35316014
    20 7v2p:T (3.3) BS01 rna ? GO:0003723 ... P80380 35316014
    21 7v2p:U (3.3) BS01 rna 2.1.1.182 GO:0000154 ... P37468 35316014
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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