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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7uvw:0 (2.37) BS01 rna ? GO:0003735 ... A0A7U4DFF9 37192172
    2 7uvw:1 (2.37) BS01 rna ? GO:0003735 ... N/A 37192172
    3 7uvw:2 (2.37) BS01 rna ? GO:0003735 ... B7I693 37192172
    4 7uvw:3 (2.37) BS01 rna ? GO:0003735 ... B7IA18 37192172
    5 7uvw:3 (2.37) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    6 7uvw:C (2.37) BS01 rna ? GO:0002181 ... B7IA36 37192172
    7 7uvw:D (2.37) BS01 rna ? GO:0003735 ... B7IA39 37192172
    8 7uvw:E (2.37) BS01 rna ? GO:0003735 ... B7IA38 37192172
    9 7uvw:F (2.37) BS01 rna ? GO:0000049 ... B7IA27 37192172
    10 7uvw:F (2.37) BS02 rna ? GO:0000049 ... B7IA27 37192172
    11 7uvw:G (2.37) BS01 rna ? GO:0002181 ... B7IA24 37192172
    12 7uvw:H (2.37) BS01 rna ? GO:0003735 ... B7IBC3 37192172
    13 7uvw:I (2.37) BS01 rna ? GO:0003729 ... B7I9B0 37192172
    14 7uvw:J (2.37) BS01 rna ? GO:0003735 ... N8SHC6 37192172
    15 7uvw:K (2.37) BS01 rna ? GO:0003735 ... B7IA20 37192172
    16 7uvw:L (2.37) BS01 rna ? GO:0000049 ... B7IA32 37192172
    17 7uvw:L (2.37) BS02 rna ? GO:0000049 ... B7IA32 37192172
    18 7uvw:M (2.37) BS01 rna ? GO:0003735 ... B7IA13 37192172
    19 7uvw:N (2.37) BS01 rna ? GO:0003735 ... B7IA23 37192172
    20 7uvw:N (2.37) BS02 rna ? GO:0003735 ... B7IA23 37192172
    21 7uvw:O (2.37) BS01 rna ? GO:0003735 ... B7IAS9 37192172
    22 7uvw:O (2.37) BS02 rna ? GO:0003735 ... B7IAS9 37192172
    23 7uvw:P (2.37) BS01 rna ? GO:0000027 ... V5VGC9 37192172
    24 7uvw:Q (2.37) BS01 rna ? GO:0003723 ... B7I6V9 37192172
    25 7uvw:R (2.37) BS01 rna ? GO:0003735 ... A0A009I821 37192172
    26 7uvw:S (2.37) BS01 rna ? GO:0000027 ... B7IA37 37192172
    27 7uvw:T (2.37) BS01 rna ? GO:0003723 ... B7IA28 37192172
    28 7uvw:U (2.37) BS01 rna ? GO:0003723 ... B7I7B6 37192172
    29 7uvw:V (2.37) BS01 rna ? GO:0003735 ... B7I6V8 37192172
    30 7uvw:V (2.37) BS02 rna ? GO:0003735 ... B7I6V8 37192172
    31 7uvw:W (2.37) BS01 rna ? GO:0003735 ... N/A 37192172
    32 7uvw:X (2.37) BS01 rna ? GO:0003735 ... B7IA31 37192172
    33 7uvw:Y (2.37) BS01 rna ? GO:0003735 ... B7IA21 37192172
    34 7uvw:Z (2.37) BS01 rna ? GO:0003735 ... B7I7A4 37192172
    35 7uvw:b (2.37) BS01 rna ? GO:0003735 ... V5VBC2 37192172
    36 7uvw:c (2.37) BS01 rna ? GO:0003676 ... V5V9N0 37192172
    37 7uvw:d (2.37) BS01 rna ? GO:0003723 ... B7IA15 37192172
    38 7uvw:e (2.37) BS01 rna ? GO:0003723 ... B7IA22 37192172
    39 7uvw:f (2.37) BS01 rna ? GO:0003735 ... B7IBC1 37192172
    40 7uvw:g (2.37) BS01 rna ? GO:0000028 ... B7I7S0 37192172
    41 7uvw:h (2.37) BS01 rna ? GO:0003735 ... B7IA25 37192172
    42 7uvw:i (2.37) BS01 rna ? GO:0003723 ... V5VBA5 37192172
    43 7uvw:i (2.37) BS02 rna ? GO:0003723 ... V5VBA5 37192172
    44 7uvw:j (2.37) BS01 rna N/A GO:0003723 ... N/A 37192172
    45 7uvw:k (2.37) BS01 rna ? GO:0003735 ... A0A4R0F9S8 37192172
    46 7uvw:l (2.37) BS01 rna ? GO:0000049 ... B7I7R9 37192172
    47 7uvw:m (2.37) BS01 rna ? GO:0000049 ... B7IA17 37192172
    48 7uvw:n (2.37) BS01 rna ? GO:0003735 ... B7IA26 37192172
    49 7uvw:o (2.37) BS01 rna ? GO:0003735 ... B7I3U0 37192172
    50 7uvw:o (2.37) BS02 rna ? GO:0003735 ... B7I3U0 37192172
    51 7uvw:p (2.37) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 37192172
    52 7uvw:q (2.37) BS01 rna ? GO:0003735 ... B7IA30 37192172
    53 7uvw:r (2.37) BS01 rna N/A GO:0003735 ... N/A 37192172
    54 7uvw:s (2.37) BS01 rna ? GO:0000028 ... B7IA35 37192172
    55 7uvw:t (2.37) BS01 rna ? GO:0003723 ... B7I5N9 37192172
    56 7uvw:u (2.37) BS01 rna ? GO:0003735 ... A0A0Q7FMS9 37192172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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