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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tm3:1 (3.25) BS01 peptide ? GO:0005048 ... P38377 36261528
    2 7tm3:1 (3.25) BS02 rna ? GO:0005048 ... P38377 36261528
    3 7tm3:3 (3.25) BS01 peptide N/A GO:0006605 ... N/A 36261528
    4 7tm3:4 (3.25) BS01 rna ? GO:0005509 ... A0A8C0RJF2 36261528
    5 7tm3:6 (3.25) BS01 rna ? GO:0005789 ... A0A8C0RUW0 36261528
    6 7tm3:A (3.25) BS01 rna ? GO:0002181 ... G1TT27 36261528
    7 7tm3:C (3.25) BS01 rna ? GO:0003723 ... G1SVW5 36261528
    8 7tm3:C (3.25) BS02 rna ? GO:0003723 ... G1SVW5 36261528
    9 7tm3:D (3.25) BS01 rna ? GO:0000027 ... P19949 36261528
    10 7tm3:D (3.25) BS02 rna ? GO:0000027 ... P19949 36261528
    11 7tm3:E (3.25) BS01 rna ? GO:0000027 ... G1SKF7 36261528
    12 7tm3:F (3.25) BS01 rna ? GO:0000463 ... G1TUB1 36261528
    13 7tm3:F (3.25) BS02 rna ? GO:0000463 ... G1TUB1 36261528
    14 7tm3:G (3.25) BS01 rna ? GO:0000470 ... G1STW0 36261528
    15 7tm3:G (3.25) BS02 rna ? GO:0000470 ... G1STW0 36261528
    16 7tm3:H (3.25) BS01 rna ? GO:0002181 ... G1SWI6 36261528
    17 7tm3:I (3.25) BS01 rna ? GO:0000027 ... B7NZQ2 36261528
    18 7tm3:I (3.25) BS02 rna ? GO:0000027 ... B7NZQ2 36261528
    19 7tm3:I (3.25) BS03 MG ? GO:0000027 ... B7NZQ2 36261528
    20 7tm3:J (3.25) BS01 rna ? GO:0003723 ... G1TUB8 36261528
    21 7tm3:J (3.25) BS02 rna ? GO:0003723 ... G1TUB8 36261528
    22 7tm3:L (3.25) BS01 rna N/A GO:0003735 ... N/A 36261528
    23 7tm3:L (3.25) BS02 rna N/A GO:0003735 ... N/A 36261528
    24 7tm3:M (3.25) BS01 rna ? GO:0003723 ... G1SZ12 36261528
    25 7tm3:N (3.25) BS01 rna ? GO:0002181 ... G1T0C1 36261528
    26 7tm3:N (3.25) BS02 rna ? GO:0002181 ... G1T0C1 36261528
    27 7tm3:O (3.25) BS01 rna N/A GO:0003735 ... N/A 36261528
    28 7tm3:P (3.25) BS01 peptide ? GO:0002181 ... G1SCJ6 36261528
    29 7tm3:P (3.25) BS02 rna ? GO:0002181 ... G1SCJ6 36261528
    30 7tm3:P (3.25) BS03 rna ? GO:0002181 ... G1SCJ6 36261528
    31 7tm3:Q (3.25) BS01 rna N/A GO:0003735 ... N/A 36261528
    32 7tm3:R (3.25) BS01 rna ? GO:0003723 ... G1TJR3 36261528
    33 7tm3:S (3.25) BS01 rna N/A GO:0003735 ... N/A 36261528
    34 7tm3:S (3.25) BS02 rna N/A GO:0003735 ... N/A 36261528
    35 7tm3:T (3.25) BS01 rna ? GO:0003735 ... G1SHQ2 36261528
    36 7tm3:T (3.25) BS02 rna ? GO:0003735 ... G1SHQ2 36261528
    37 7tm3:U (3.25) BS01 rna ? GO:0002181 ... G1TSG1 36261528
    38 7tm3:V (3.25) BS01 rna ? GO:0000122 ... G1T6D1 36261528
    39 7tm3:W (3.25) BS01 rna ? GO:0000027 ... G1SE28 36261528
    40 7tm3:X (3.25) BS01 rna ? GO:0000027 ... G1SE76 36261528
    41 7tm3:X (3.25) BS02 rna ? GO:0000027 ... G1SE76 36261528
    42 7tm3:Y (3.25) BS01 rna ? GO:0002181 ... G1SQH0 36261528
    43 7tm3:Y (3.25) BS02 rna ? GO:0002181 ... G1SQH0 36261528
    44 7tm3:Z (3.25) BS01 rna ? GO:0003735 ... G1TXF6 36261528
    45 7tm3:a (3.25) BS01 rna ? GO:0003735 ... G1SNY0 36261528
    46 7tm3:b (3.25) BS01 rna ? GO:0002181 ... G1SGR6 36261528
    47 7tm3:c (3.25) BS01 rna ? GO:0002181 ... G1TDL2 36261528
    48 7tm3:d (3.25) BS01 rna ? GO:0002181 ... G1SHG0 36261528
    49 7tm3:e (3.25) BS01 rna ? GO:0003735 ... G1TUN8 36261528
    50 7tm3:f (3.25) BS01 rna ? GO:0000049 ... G1SF08 36261528
    51 7tm3:g (3.25) BS01 rna ? GO:0003735 ... G1TXG5 36261528
    52 7tm3:g (3.25) BS02 ZN ? GO:0003735 ... G1TXG5 36261528
    53 7tm3:h (3.25) BS01 rna ? GO:0000463 ... G1SIT5 36261528
    54 7tm3:h (3.25) BS02 rna ? GO:0000463 ... G1SIT5 36261528
    55 7tm3:i (3.25) BS01 rna ? GO:0002181 ... G1TTQ5 36261528
    56 7tm3:j (3.25) BS01 rna ? GO:0003723 ... U3KPD5 36261528
    57 7tm3:j (3.25) BS02 rna ? GO:0003723 ... U3KPD5 36261528
    58 7tm3:j (3.25) BS03 ZN ? GO:0003723 ... U3KPD5 36261528
    59 7tm3:k (3.25) BS01 rna ? GO:0003735 ... G1U001 36261528
    60 7tm3:l (3.25) BS01 peptide ? GO:0003735 ... G1TTN1 36261528
    61 7tm3:l (3.25) BS02 rna ? GO:0003735 ... G1TTN1 36261528
    62 7tm3:l (3.25) BS03 rna ? GO:0003735 ... G1TTN1 36261528
    63 7tm3:m (3.25) BS01 rna N/A GO:0003735 ... N/A 36261528
    64 7tm3:m (3.25) BS02 ZN N/A GO:0003735 ... N/A 36261528
    65 7tm3:o (3.25) BS01 rna ? GO:0003735 ... G1T040 36261528
    66 7tm3:o (3.25) BS02 ZN ? GO:0003735 ... G1T040 36261528
    67 7tm3:p (3.25) BS01 rna ? GO:0003735 ... G1SY53 36261528
    68 7tm3:p (3.25) BS02 ZN ? GO:0003735 ... G1SY53 36261528
    69 7tm3:r (3.25) BS01 rna ? GO:0003735 ... G1U7L1 36261528
    70 7tm3:w (3.25) BS01 rna ? GO:0003723 ... G1TL06 36261528
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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